View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9772_low_38 (Length: 338)
Name: NF9772_low_38
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9772_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 6455547 - 6455859
Alignment:
| Q |
18 |
atttttccctatcaacaaacacattattatattcgaatgaaaacacccaaatacaatagtagtacacacatagaaacaacaattata----gacaatcat |
113 |
Q |
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| T |
6455547 |
atttatccctatcaacaaacacattattatattcgaatgaaaacacccaaatacaatagtagtacacacatagaaacaacaattataaatagacaatcat |
6455646 |
T |
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| Q |
114 |
catattcacatcgatgtacatcgatgttattggaaagcgaaaatgcacaatagataagaaataatccacacacnnnnnnnnnnnnnnnnctaaatagaga |
213 |
Q |
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| T |
6455647 |
catattcacatcgatgtacatcgatgttattggaaagcgaaaatgcacaatagataagaaataatccacaca-gactttttttttctttctaaatagaga |
6455745 |
T |
|
| Q |
214 |
tactgttgggaattcctctaaaagttaaaccttcttcacttgaacgaaggagcaaagtgtaaggcaattcaactggtccagtgcggtttttcaaactaga |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6455746 |
tactgttgggaattcctctaaaagttaaaccttcttcacttgaacgaaggagcaaagtgtagggcaattcaactggtccagtgcggtttttcaaactaga |
6455845 |
T |
|
| Q |
314 |
atctctgctcctcc |
327 |
Q |
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|||| || |||||| |
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| T |
6455846 |
atctttgttcctcc |
6455859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 203 - 313
Target Start/End: Original strand, 6449268 - 6449378
Alignment:
| Q |
203 |
ctaaatagagatactgttgggaattcctctaaaagttaaaccttcttcacttgaacgaaggagcaaagtgtaaggcaattcaactggtccagtgcggttt |
302 |
Q |
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| T |
6449268 |
ctaaatagagatactgttgggaattcctctgaatgttaaaccttcttcacttgaacgaagtagcaaagtgtagggcaattgcactggtccggtgcggttt |
6449367 |
T |
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| Q |
303 |
ttcaaactaga |
313 |
Q |
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|||||||||| |
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| T |
6449368 |
ctcaaactaga |
6449378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 257
Target Start/End: Original strand, 6261733 - 6261780
Alignment:
| Q |
210 |
gagatactgttgggaattcctctaaaagttaaaccttcttcacttgaa |
257 |
Q |
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| T |
6261733 |
gagatactgttgggaattcctctaaaagtaagtccttcctcacttgaa |
6261780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 308
Target Start/End: Complemental strand, 9606746 - 9606643
Alignment:
| Q |
205 |
aaatagagatactgttgggaattcctctaaaagttaaaccttcttcacttgaacgaaggagcaaagtgtaaggcaattcaactggtccagtgcggttttt |
304 |
Q |
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||||||||||||||||||||||||||||||| ||||| || |||||||| |||||| | |||||||| || ||||||| || || ||||| || ||||| |
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| T |
9606746 |
aaatagagatactgttgggaattcctctaaaggttaatccatcttcactagaacgatgaagcaaagtatagggcaattgcaccggcccagttcgattttt |
9606647 |
T |
|
| Q |
305 |
caaa |
308 |
Q |
| |
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|||| |
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| T |
9606646 |
caaa |
9606643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 279
Target Start/End: Original strand, 42691751 - 42691823
Alignment:
| Q |
207 |
atagagatactgttgggaattcctctaaaagttaaaccttcttcacttgaacgaaggagcaaagtgtaaggca |
279 |
Q |
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||||||||||| || ||||||||||||||||||| ||||| ||||| ||| || | |||||||| ||||||| |
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| T |
42691751 |
atagagatactattaggaattcctctaaaagttagtccttcctcactagaaggatgaagcaaagtataaggca |
42691823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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