View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9772_low_4 (Length: 518)
Name: NF9772_low_4
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9772_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 13 - 502
Target Start/End: Original strand, 419637 - 420126
Alignment:
| Q |
13 |
cagaagcaacaacaattccctagccgtcgatttggctctccacgttccatcgacggttaactgaagtaatcctggcatcaccccatctgtcaaaatcaat |
112 |
Q |
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| T |
419637 |
cagaagcaacaacaattccctagccgtcgatttggctctccacgttccatcgacggttaactgaagtaatcctggcatcaccccatctgtcaaaatcaat |
419736 |
T |
|
| Q |
113 |
actctatatttttctctgcagctttgacatataagcagaagtatgccaactgcatgctcttttcctagtgaagatccatcttcaattgtctcaaccagta |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
419737 |
actctatatttttctctgcagctttgacatataagcagaagtatgccaactgcatgctcttttcctagtgaagatccatcttcaattgtctcaaccagta |
419836 |
T |
|
| Q |
213 |
tccgaattgctcctccgatactagcagcctcacaaagtgcactctctgatgaagaaacaatattttctagcaatcctatcgctttctcaaccaatagaga |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
419837 |
tccgaattgctcctccgatactagcagcctcacaaagtgcactctctgatgaagaaacaatattttctagcaatcctatcgctttctcaaccaatagaga |
419936 |
T |
|
| Q |
313 |
tgattttaccgagtcgtggataagttcaagcaaggagaatataacaccagaagatgcaatcaatggaattatctcttggcaggatgtgaggttatggaga |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
419937 |
tgattttaccgagtcgtggataagttcaagcaaggagaatataacaccagaagatgcaatcaatggaattatctcttggcaggatgtgaggttatggaga |
420036 |
T |
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| Q |
413 |
gtagctatagtgtctagttgagactgagtttcaatgttactattattgataagttcaaccagaatttgaactgcaccagatgaagctatt |
502 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
420037 |
gtagctatagtgtctagttgagactgagtttcaatgttactattattgataagttcaaccagaatttgaactgcaccagatgaagctatt |
420126 |
T |
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