View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9772_low_55 (Length: 254)
Name: NF9772_low_55
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9772_low_55 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 24 - 162
Target Start/End: Original strand, 44309401 - 44309539
Alignment:
| Q |
24 |
tgcaacatttttcgtcattaatagatatgcattttgcgtcatcaatttagtagactttttgatgttgcattggataaggaaaaattggttgcagatatgt |
123 |
Q |
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| T |
44309401 |
tgcaacatttttcgtcattaatagatatacattttgcgtcatcaatttagtagactttttgatgttgcattggataaggaaaaattggttgcagatatgt |
44309500 |
T |
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| Q |
124 |
ttgaagaggagggttgagttaaaatgaatttcaacaaaa |
162 |
Q |
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| T |
44309501 |
ttgaagaggagggttgagttaaaatgaatttcaacaaaa |
44309539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 159 - 254
Target Start/End: Original strand, 44309978 - 44310073
Alignment:
| Q |
159 |
aaaaaggtccaacttctcataatagctttccaaaaaccttgtcttgagatgcatactatgaactaccaccagtccattgtgaaagagattgacata |
254 |
Q |
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| T |
44309978 |
aaaaaggtccaacttctcataatagctttccaaaaaccttgtcttgagatgcatactatgaactaccaccagtccattgtgaaagagattgacata |
44310073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 11 - 204
Target Start/End: Original strand, 18701145 - 18701354
Alignment:
| Q |
11 |
gaagcaaaggccctgcaacatttttcgtcattaatagatatgcattttgcgtcatcaatttagtagactttttgatgttgcattggataaggaaaaattg |
110 |
Q |
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| T |
18701145 |
gaagcaaaggccctggaacatttttcgtcattaatagatatacattttgtgtcatcaatttagtagactttttgatgttgcgttggataagtaaaaattg |
18701244 |
T |
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| Q |
111 |
gttgcagatatgtttgaagaggagggttgagttaaaatgaatttc----------------aacaaaaaggtccaacttctcataatagctttccaaaaa |
194 |
Q |
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| T |
18701245 |
gttgcagatatgtttgaagaggagggttgagttaaaatgaatttcaatagacagtaaataaaataaaaaggtccaacttctcataatagctttccaaaaa |
18701344 |
T |
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| Q |
195 |
ccttgtcttg |
204 |
Q |
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| T |
18701345 |
ccttgtcttg |
18701354 |
T |
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