View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9772_low_62 (Length: 248)
Name: NF9772_low_62
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9772_low_62 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 6923994 - 6924235
Alignment:
| Q |
1 |
ttggaaatgcgcgtgagtgaaccatgtcccaccagctgttccttttcacgcctcc-------------gcgacccttccgatcgtaaccttatagtcgac |
87 |
Q |
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||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6923994 |
ttggaaatgcgcgcgattgaaccatgtcccaccagctgttccttttcacgcctccacgactgaaaacggcgacccttccgatcgtaaccttatagtcgac |
6924093 |
T |
|
| Q |
88 |
ggtcatcatcttccactgtcactctacctggccttgaatattgtaacactgccttcccatcatgcgatagaacctgacgacaaaacccttgttcctcctt |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6924094 |
ggtcatcatcttccactgtcactctacctggccttgaatattgtaacactaccttcccatcatgcgatagaacctgacgacaaaacccttgttcctcctt |
6924193 |
T |
|
| Q |
188 |
gccgctgttcctcccgaaacctgtcccgtcgtccatccacct |
229 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
6924194 |
gccgctgttcctcccgaaacctgtcccgtcgtccatccacct |
6924235 |
T |
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