View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9772_low_63 (Length: 247)
Name: NF9772_low_63
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9772_low_63 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 4 - 231
Target Start/End: Complemental strand, 26207108 - 26206881
Alignment:
| Q |
4 |
ccaggagttagatgtggtagaaaagtaacattgagttgttgggtttgagtttccatgtttaagacacaagttgagatgagaaatattaatcaacttttct |
103 |
Q |
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| T |
26207108 |
ccaggagttggatatggtagaaaagtaacattgagttgttgggtttgagtttccatgtttaagacacaagttgagatgagaaatattactcaacttttct |
26207009 |
T |
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| Q |
104 |
ttccaagtaaacacaatttgaagctctaccttgtaatctttctcacgcatctttctcgtgtattctgaacaagtatagatgattctgtttttgtctttta |
203 |
Q |
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||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26207008 |
ttccaagtaaatacaatttgaagctctaccttttaatctttctcacgcatatttctcgtgtattctgaacaagtatagatgatcctgtttttgtctttta |
26206909 |
T |
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| Q |
204 |
tttgcattataagttcattggaataagt |
231 |
Q |
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| T |
26206908 |
tttgcattatgagttcattggaataagt |
26206881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 26226646 - 26226421
Alignment:
| Q |
1 |
tgaccaggagttagatgtggtagaaaagtaacattgagttgttgggtttgagtttccatgtttaagacacaagttgagatgagaaatattaatcaacttt |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||| | ||||||||||| ||||||||||| |||||||| |
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| T |
26226646 |
tgaccaggagttacatgtggtagaaaagtaacattgagttgttggggttgagtttctatgtttataaaacaagttgagaagagaaatattactcaacttt |
26226547 |
T |
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| Q |
101 |
tctttccaagtaaacacaatttgaagctctaccttgtaatctttctcacgcatctttctcgtgtattctgaacaagtatagatgattctgtttttgtctt |
200 |
Q |
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|||| || ||||||||||||| |||||||||| |||||||||| ||||||||||||| || || |||||||||||||||||||||| ||||||||| |
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| T |
26226546 |
tcttacc----aaacacaatttgaggctctaccttttaatctttctaacgcatctttctcatgcatcgtgaacaagtatagatgattctg-ttttgtctt |
26226452 |
T |
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| Q |
201 |
ttatttgcattataagttcattggaataagt |
231 |
Q |
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|||||||||||||||| |||||||||||||| |
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| T |
26226451 |
ttatttgcattataagatcattggaataagt |
26226421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 26259572 - 26259492
Alignment:
| Q |
4 |
ccaggagttagatgtggtagaaaagtaacattgagttgttgggtttgagtttccatgtttaagacacaagttgagatgagaaa |
86 |
Q |
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||||||||||||| ||||||||| |||||||||||| ||| | ||||| |||||| |||| | ||||||| |||||||||| |
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| T |
26259572 |
ccaggagttagataaggtagaaaaataacattgagtttttgagattgagattccatttttatg--acaagtttagatgagaaa |
26259492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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