View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9772_low_66 (Length: 242)
Name: NF9772_low_66
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9772_low_66 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 45367265 - 45367475
Alignment:
| Q |
15 |
cataggttttggtttgaatgaatctgtaaagaaaccaagcaagaagtgttaaacaaaatagggagagaaagcaacctaggaatttagcatgtccaagtgt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45367265 |
cataggttttggtttgaatgaatctgtaaagaaaccaagcaagaagtgttaaacaaaatagggagagaaagcaacctaggaatttagcatgtccaagtgt |
45367364 |
T |
|
| Q |
115 |
tgtgcctcagcttatcagtggactaatattcagagtgaagacccaatttggttctacaattttctcgcaatccaatttag--tgacaaaataaaactaga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45367365 |
tgtgcctcagcttatcagtggactaatattcagagtgaagacccaatttggttctacaattttctcgcaatccaatttagtctgacaaaataaaactaga |
45367464 |
T |
|
| Q |
213 |
ctaatttgttc |
223 |
Q |
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||||||||||| |
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| T |
45367465 |
ctaatttgttc |
45367475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 432159 - 432336
Alignment:
| Q |
15 |
cataggttttggtttgaatgaatctgtaaagaaaccaagcaagaagtgttaaacaaaatagggagagaaagcaacctaggaatttagcatgtccaagtgt |
114 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
432159 |
catagcttttggtttgaatgaatctgtaaagaaaccaagcaagaagtgctaaacaaaatagggagagaaagcaacctaggaatttggcatgtcctagtgt |
432258 |
T |
|
| Q |
115 |
tgtgcctcagcttatcagtggactaatattcagagtgaagacccaatttggttctacaattttctcgcaatccaatttagt |
195 |
Q |
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|||||||||||||||||| |||||||||| ||||||||| |||||||||| |||||||||||||||| |||||||||| |
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| T |
432259 |
--tgcctcagcttatcagtgtactaatattcggagtgaaga-ccaatttggtcttacaattttctcgcaacccaatttagt |
432336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 92
Target Start/End: Complemental strand, 41816113 - 41816081
Alignment:
| Q |
60 |
gtgttaaacaaaatagggagagaaagcaaccta |
92 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
41816113 |
gtgttaaacaaaatagggagagaaagcaaccta |
41816081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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