View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9772_low_67 (Length: 242)

Name: NF9772_low_67
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9772_low_67
NF9772_low_67
[»] chr1 (16 HSPs)
chr1 (6-146)||(26240779-26240919)
chr1 (67-146)||(16449555-16449634)
chr1 (67-146)||(16459129-16459208)
chr1 (96-146)||(26240114-26240164)
chr1 (69-145)||(4060021-4060097)
chr1 (102-146)||(27746162-27746206)
chr1 (99-146)||(12449313-12449360)
chr1 (108-142)||(14166917-14166951)
chr1 (98-146)||(24847783-24847831)
chr1 (98-146)||(24848426-24848474)
chr1 (95-147)||(51547591-51547643)
chr1 (108-146)||(27745556-27745594)
chr1 (101-147)||(31116687-31116733)
chr1 (33-146)||(13416270-13416383)
chr1 (101-146)||(31109239-31109284)
chr1 (102-146)||(33357733-33357777)
[»] chr3 (32 HSPs)
chr3 (149-242)||(42112648-42112741)
chr3 (10-146)||(53242666-53242803)
chr3 (56-142)||(43479469-43479555)
chr3 (91-148)||(47571194-47571251)
chr3 (99-147)||(15287566-15287614)
chr3 (98-146)||(20807937-20807985)
chr3 (97-149)||(24511991-24512043)
chr3 (6-146)||(49349676-49349815)
chr3 (98-145)||(9830573-9830620)
chr3 (91-146)||(47571932-47571987)
chr3 (99-145)||(54308454-54308500)
chr3 (85-146)||(41419606-41419667)
chr3 (98-146)||(4706956-4707004)
chr3 (98-146)||(20808607-20808655)
chr3 (86-146)||(43454150-43454209)
chr3 (98-146)||(49350270-49350318)
chr3 (99-146)||(53503-53550)
chr3 (99-146)||(16076210-16076257)
chr3 (108-147)||(33761969-33762008)
chr3 (103-146)||(54753577-54753620)
chr3 (108-146)||(46883764-46883802)
chr3 (108-146)||(47808362-47808400)
chr3 (108-146)||(53344751-53344789)
chr3 (89-146)||(14746041-14746098)
chr3 (33-146)||(14746837-14746949)
chr3 (111-144)||(48626127-48626160)
chr3 (83-147)||(31629340-31629404)
chr3 (108-144)||(38557241-38557277)
chr3 (102-146)||(47809117-47809161)
chr3 (98-146)||(48190595-48190643)
chr3 (98-146)||(52924433-52924481)
chr3 (102-146)||(53344017-53344061)
[»] chr4 (27 HSPs)
chr4 (6-146)||(34941502-34941642)
chr4 (6-142)||(18363561-18363697)
chr4 (6-142)||(36599231-36599367)
chr4 (6-146)||(24666760-24666900)
chr4 (88-146)||(2460847-2460905)
chr4 (99-146)||(13924793-13924840)
chr4 (83-146)||(24666129-24666192)
chr4 (83-146)||(25055109-25055172)
chr4 (19-141)||(47156638-47156760)
chr4 (36-146)||(47157317-47157427)
chr4 (36-148)||(8752272-8752384)
chr4 (99-146)||(14527577-14527624)
chr4 (75-146)||(34451414-34451485)
chr4 (99-146)||(51386456-51386503)
chr4 (99-145)||(20143280-20143326)
chr4 (108-146)||(21527035-21527073)
chr4 (98-148)||(25725808-25725858)
chr4 (39-144)||(53778356-53778461)
chr4 (102-146)||(34450815-34450859)
chr4 (109-149)||(52129418-52129458)
chr4 (99-146)||(6057000-6057047)
chr4 (99-146)||(26354233-26354280)
chr4 (97-148)||(35605989-35606040)
chr4 (108-142)||(26393408-26393442)
chr4 (108-146)||(42792775-42792813)
chr4 (66-144)||(47764069-47764147)
chr4 (33-146)||(21281096-21281209)
[»] chr5 (20 HSPs)
chr5 (66-146)||(24565573-24565653)
chr5 (66-146)||(24606609-24606689)
chr5 (67-146)||(2029016-2029095)
chr5 (99-147)||(29595595-29595643)
chr5 (90-146)||(40372152-40372208)
chr5 (98-145)||(15561411-15561458)
chr5 (95-146)||(35524874-35524925)
chr5 (99-146)||(39937907-39937954)
chr5 (108-146)||(27345929-27345967)
chr5 (95-148)||(4095110-4095162)
chr5 (108-149)||(20476126-20476167)
chr5 (71-146)||(23253458-23253534)
chr5 (111-146)||(5346295-5346330)
chr5 (91-146)||(33086729-33086784)
chr5 (99-146)||(35524122-35524169)
chr5 (99-146)||(39466885-39466932)
chr5 (107-146)||(39936255-39936294)
chr5 (109-146)||(16195140-16195177)
chr5 (98-147)||(38129125-38129174)
chr5 (78-146)||(2028337-2028405)
[»] chr7 (26 HSPs)
chr7 (67-146)||(46491657-46491736)
chr7 (33-146)||(767136-767249)
chr7 (38-147)||(41965717-41965826)
chr7 (66-146)||(36611462-36611542)
chr7 (95-146)||(41358968-41359019)
chr7 (56-146)||(24873751-24873841)
chr7 (97-146)||(28007157-28007206)
chr7 (99-147)||(30581267-30581315)
chr7 (95-146)||(41617192-41617243)
chr7 (108-146)||(3315473-3315511)
chr7 (36-142)||(40427521-40427625)
chr7 (36-145)||(10590299-10590408)
chr7 (99-144)||(44876935-44876980)
chr7 (90-146)||(767958-768014)
chr7 (99-147)||(3314954-3315002)
chr7 (110-146)||(17114145-17114181)
chr7 (90-146)||(41358311-41358367)
chr7 (99-147)||(41617982-41618030)
chr7 (102-146)||(42818557-42818601)
chr7 (99-146)||(24874579-24874626)
chr7 (99-141)||(36611556-36611598)
chr7 (99-141)||(37783482-37783524)
chr7 (99-147)||(3850367-3850415)
chr7 (108-148)||(30580633-30580673)
chr7 (110-146)||(41965112-41965148)
chr7 (98-146)||(44120358-44120406)
[»] chr2 (14 HSPs)
chr2 (67-146)||(127704-127783)
chr2 (6-144)||(19697358-19697496)
chr2 (67-146)||(127033-127114)
chr2 (99-147)||(7754968-7755016)
chr2 (98-146)||(30201988-30202036)
chr2 (66-134)||(38138695-38138763)
chr2 (91-147)||(44987532-44987588)
chr2 (99-146)||(20606922-20606969)
chr2 (108-146)||(29388958-29388996)
chr2 (99-148)||(44296858-44296907)
chr2 (108-141)||(44297424-44297457)
chr2 (110-147)||(44986811-44986848)
chr2 (110-150)||(2656496-2656536)
chr2 (102-146)||(18537497-18537541)
[»] chr8 (20 HSPs)
chr8 (95-146)||(22632965-22633016)
chr8 (95-145)||(22632323-22632373)
chr8 (38-146)||(5434032-5434140)
chr8 (98-146)||(16911046-16911094)
chr8 (91-146)||(42094009-42094064)
chr8 (33-149)||(26132068-26132184)
chr8 (70-146)||(26847097-26847173)
chr8 (99-149)||(4402288-4402338)
chr8 (33-146)||(36402960-36403073)
chr8 (102-146)||(9277786-9277830)
chr8 (6-81)||(32566490-32566563)
chr8 (66-146)||(36402201-36402281)
chr8 (91-146)||(27243446-27243501)
chr8 (91-146)||(27255021-27255076)
chr8 (91-146)||(42094737-42094792)
chr8 (99-148)||(31713869-31713918)
chr8 (94-146)||(5434765-5434817)
chr8 (102-134)||(16718381-16718413)
chr8 (99-147)||(26847722-26847770)
chr8 (98-146)||(42663997-42664045)
[»] chr6 (4 HSPs)
chr6 (38-146)||(16718933-16719042)
chr6 (110-147)||(5310449-5310486)
chr6 (85-146)||(10966367-10966428)
chr6 (98-146)||(5312241-5312289)
[»] scaffold0627 (1 HSPs)
scaffold0627 (99-146)||(6464-6511)


Alignment Details
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 6 - 146
Target Start/End: Original strand, 26240779 - 26240919
Alignment:
Q  6 agggacaaaattgtatgtgaaaatgcctatatgttctcaattttatttccaataaatcgtaaccattgattcaatcaaatggtgttttcttcatggtcca 105  Q
    |||||||| ||||||||| |||||| ||| ||||||||||| |||||| |||||||||  ||||||||||||||||||| ||| ||||||||||||||||    
T  26240779 agggacaagattgtatgttaaaatgtctagatgttctcaatattattttcaataaatctcaaccattgattcaatcaaacggtattttcttcatggtcca 26240878  T
Q  106 ctggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    | |||||||||||||||||| ||||||||||||||||||||    
T  26240879 ccggtgagggacttaattgaaccctcaccctagaatccacc 26240919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 16449634 - 16449555
Alignment:
Q  67 accattgattcaatcaaatggtgttttcttcatggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||||||||||||||||||||||| |  |  || | ||| |||||||||||||||||| ||||||||||||||||||||    
T  16449634 accattgattcaatcaaatggtgttattgtggtgcttcaccggtgagggacttaattgaaccctcaccctagaatccacc 16449555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 16459208 - 16459129
Alignment:
Q  67 accattgattcaatcaaatggtgttttcttcatggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||||||||||||||||||||||| |  |  || | ||| |||||||||||||||||| ||||||||||||||||||||    
T  16459208 accattgattcaatcaaatggtgttattgtggtgcttcaccggtgagggacttaattgaaccctcaccctagaatccacc 16459129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 26240164 - 26240114
Alignment:
Q  96 tcatggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||||| ||| |||||||||||||||||| ||||||||||||||||||||    
T  26240164 tcatggttcaccggtgagggacttaattgatccctcaccctagaatccacc 26240114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 4060021 - 4060097
Alignment:
Q  69 cattgattcaatcaaatggtgttttcttcatggtccactggtgagggacttaattgagccctcaccctagaatccac 145  Q
    |||||||| |||| ||| ||  ||||||| |||||||| ||||| ||| ||||||||||||||| ||||||||||||    
T  4060021 cattgattaaatccaatcgtactttcttcgtggtccaccggtgacggatttaattgagccctcatcctagaatccac 4060097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 27746162 - 27746206
Alignment:
Q  102 tccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  27746162 tccactggtgagggacttaattgaaccctcacgctagaatccacc 27746206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 12449313 - 12449360
Alignment:
Q  99 tggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||||| |||||||||||||||||| ||||||||||| ||||||||    
T  12449313 tggtccaccggtgagggacttaattgatccctcaccctaaaatccacc 12449360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 142
Target Start/End: Original strand, 14166917 - 14166951
Alignment:
Q  108 ggtgagggacttaattgagccctcaccctagaatc 142  Q
    |||||||||||||||||||||||||||||||||||    
T  14166917 ggtgagggacttaattgagccctcaccctagaatc 14166951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 24847831 - 24847783
Alignment:
Q  98 atggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||| ||| ||||||||||||||| || ||||||||||||||||||||    
T  24847831 atggtacaccggtgagggacttaatagaaccctcaccctagaatccacc 24847783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 24848426 - 24848474
Alignment:
Q  98 atggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||| ||| ||||||||||||||| || ||||||||||||||||||||    
T  24848426 atggtacaccggtgagggacttaatagaaccctcaccctagaatccacc 24848474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 51547643 - 51547591
Alignment:
Q  95 ttcatggtccactggtgagggacttaattgagccctcaccctagaatccaccc 147  Q
    |||||||||||| ||| |||||||||||| | || ||||||||||||||||||    
T  51547643 ttcatggtccaccggtaagggacttaattaaaccatcaccctagaatccaccc 51547591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 27745594 - 27745556
Alignment:
Q  108 ggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  27745594 ggtgagggacttaattgaaccctcaccttagaatccacc 27745556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 31116687 - 31116733
Alignment:
Q  101 gtccactggtgagggacttaattgagccctcaccctagaatccaccc 147  Q
    |||||| |||||||||| ||||||  |||||||||||||||||||||    
T  31116687 gtccaccggtgagggacctaattggaccctcaccctagaatccaccc 31116733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 146
Target Start/End: Original strand, 13416270 - 13416383
Alignment:
Q  33 tatatgttctcaattttatttccaataaatcgtaaccattgattcaatcaaatggtgttttcttcatggtccactggtgagggacttaattgagccctca 132  Q
    |||||||||||| ||||| ||  |||| ||| |||||||  |||  ||| || ||||||||  || |||||||| || ||||||| ||||||  ||||||    
T  13416270 tatatgttctcacttttaatttgaatatatcttaaccatctattttatctaacggtgtttttctcgtggtccaccggcgagggacctaattggaccctca 13416369  T
Q  133 ccctagaatccacc 146  Q
     |||||||||||||    
T  13416370 tcctagaatccacc 13416383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 31109284 - 31109239
Alignment:
Q  101 gtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||| |||||||||| ||||||  ||||||||||||||||||||    
T  31109284 gtccaccggtgagggacctaattggaccctcaccctagaatccacc 31109239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 33357733 - 33357777
Alignment:
Q  102 tccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||| |||||||||||||  ||| ||||||||||||||||||||    
T  33357733 tccaccggtgagggacttatctgatccctcaccctagaatccacc 33357777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 149 - 242
Target Start/End: Original strand, 42112648 - 42112741
Alignment:
Q  149 acaatacaacccactaaccccattagttatcctatattaattaattaaccagaaaagaaatggcaagatatagttgtcgttaaccgcaaaatac 242  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42112648 acaatacaacccactaaccccattaattatcctatattaattaattaaccagaaaagaaatggcaggatatagttgtcgttaaccgcaaaatac 42112741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 10 - 146
Target Start/End: Complemental strand, 53242803 - 53242666
Alignment:
Q  10 acaaaattgtatgtgaaaatgcctatatgttctcaa-ttttatttccaataaatcgtaaccattgattcaatcaaatggtgttttcttcatggtccactg 108  Q
    ||||||||||| ||||||||| ||| |||||||||| |||||||| ||||||||| |||||||||||||||||||||||| |||||||| |||||||| |    
T  53242803 acaaaattgtaagtgaaaatgtctagatgttctcaaattttattttcaataaatcttaaccattgattcaatcaaatggtattttcttcgtggtccaccg 53242704  T
Q  109 gtgagggacttaattgagccctcaccctagaatccacc 146  Q
     ||||||||||||||||  |||||||||| ||||||||    
T  53242703 atgagggacttaattgattcctcaccctataatccacc 53242666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 56 - 142
Target Start/End: Original strand, 43479469 - 43479555
Alignment:
Q  56 aataaatcgtaaccattgattcaatcaaatggtgttttcttcatggtccactggtgagggacttaattgagccctcaccctagaatc 142  Q
    |||||||| | |||||||| ||||||||||| | ||||||||||||||||  | |||| ||||||||||| ||||||||||||||||    
T  43479469 aataaatcttgaccattgaatcaatcaaatgatattttcttcatggtccatcgatgagagacttaattgaaccctcaccctagaatc 43479555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 47571251 - 47571194
Alignment:
Q  91 tttcttcatggtccactggtgagggacttaattgagccctcaccctagaatccaccct 148  Q
    |||||||||| | ||| |||||||||||||||||| ||||||||||||||||||||||    
T  47571251 tttcttcatgcttcaccggtgagggacttaattgatccctcaccctagaatccaccct 47571194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 15287614 - 15287566
Alignment:
Q  99 tggtccactggtgagggacttaattgagccctcaccctagaatccaccc 147  Q
    |||||||| |||||||||||||||||  |||||||||||||||||||||    
T  15287614 tggtccaccggtgagggacttaattggaccctcaccctagaatccaccc 15287566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 20807985 - 20807937
Alignment:
Q  98 atggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||| ||| |||||||||||||||||| ||||||||||||||||||||    
T  20807985 atggtacaccggtgagggacttaattgaaccctcaccctagaatccacc 20807937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 24512043 - 24511991
Alignment:
Q  97 catggtccactggtgagggacttaattgagccctcaccctagaatccacccta 149  Q
    |||||||||| |||||||||||||||||  ||||||||||| |||||||||||    
T  24512043 catggtccaccggtgagggacttaattgctccctcaccctaaaatccacccta 24511991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 146
Target Start/End: Complemental strand, 49349815 - 49349676
Alignment:
Q  6 agggacaaaattgtatgtgaaaatgcctatatgttctcaattttatttccaataaatcgtaaccattgattcaatcaaatggtgttttcttcatggtcca 105  Q
    ||||| || ||||||||||| ||  | || |||||||||||||| ||||||  |||||  || |||| ||| |||| |||| | | || | |||| | ||    
T  49349815 agggataatattgtatgtgacaaaacatagatgttctcaatttt-tttccatcaaatctcaaacattaatttaatctaatgatatattttacatgcttca 49349717  T
Q  106 ctggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    | |||||||||||||||||| ||||||||||||||||||||    
T  49349716 ccggtgagggacttaattgatccctcaccctagaatccacc 49349676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 145
Target Start/End: Complemental strand, 9830620 - 9830573
Alignment:
Q  98 atggtccactggtgagggacttaattgagccctcaccctagaatccac 145  Q
    ||||||||| |||||||||||||||||| ||||||||| |||||||||    
T  9830620 atggtccaccggtgagggacttaattgaaccctcacccgagaatccac 9830573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 47571932 - 47571987
Alignment:
Q  91 tttcttcatggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||||||| | ||| |||||||||||||||||| ||||||||||||||| ||||    
T  47571932 tttcttcatgtttcaccggtgagggacttaattgatccctcaccctagaattcacc 47571987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 145
Target Start/End: Complemental strand, 54308500 - 54308454
Alignment:
Q  99 tggtccactggtgagggacttaattgagccctcaccctagaatccac 145  Q
    |||| ||| |||||||||||||||||| |||||||||||||||||||    
T  54308500 tggttcaccggtgagggacttaattgaaccctcaccctagaatccac 54308454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 41419606 - 41419667
Alignment:
Q  85 tggtgttttcttcatggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||||||| ||| |||||||| |||||||||| ||||||  ||||||| ||||||||||||    
T  41419606 tggtgtttttttcgtggtccaccggtgagggacctaattggcccctcacactagaatccacc 41419667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 4706956 - 4707004
Alignment:
Q  98 atggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||| ||| ||||||||||||||| || ||||||||||||||||||||    
T  4706956 atggtacaccggtgagggacttaatagaaccctcaccctagaatccacc 4707004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 20808607 - 20808655
Alignment:
Q  98 atggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||| ||| ||||||||||||| |||| ||||||||||||||||||||    
T  20808607 atggtacaccggtgagggacttacttgaaccctcaccctagaatccacc 20808655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 43454150 - 43454209
Alignment:
Q  86 ggtgttttcttcatggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||||||| | |||||||| |||||||||| ||||||  ||||||||||||||||||||    
T  43454150 ggtgttttct-cgtggtccacaggtgagggacctaattggaccctcaccctagaatccacc 43454209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 49350270 - 49350318
Alignment:
Q  98 atggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||| ||| || ||||||||||||||| ||||||||||||||||||||    
T  49350270 atggttcaccggcgagggacttaattgaaccctcaccctagaatccacc 49350318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 146
Target Start/End: Complemental strand, 53550 - 53503
Alignment:
Q  99 tggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||||||||||||||||||| ||||| | |||||| |||||||||||    
T  53550 tggtccactggtgagggacttgattgaactctcaccatagaatccacc 53503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 146
Target Start/End: Complemental strand, 16076257 - 16076210
Alignment:
Q  99 tggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||||| ||||||||||| ||||||  ||||||||||||||||||||    
T  16076257 tggtccattggtgagggacctaattggaccctcaccctagaatccacc 16076210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 33762008 - 33761969
Alignment:
Q  108 ggtgagggacttaattgagccctcaccctagaatccaccc 147  Q
    ||||||| ||||||| ||||||||||||||||||||||||    
T  33762008 ggtgaggaacttaatagagccctcaccctagaatccaccc 33761969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 146
Target Start/End: Complemental strand, 54753620 - 54753577
Alignment:
Q  103 ccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||||||||||||||||||||| |||||||| |||||| ||||    
T  54753620 ccactggtgagggacttaattgaaccctcaccgtagaattcacc 54753577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 46883802 - 46883764
Alignment:
Q  108 ggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||||||||||||| ||||||||||||||||| |||||    
T  46883802 ggtgagggacttaatagagccctcaccctagaagccacc 46883764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 47808400 - 47808362
Alignment:
Q  108 ggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||||||||| ||||| ||||||||||||||||||||    
T  47808400 ggtgagggacttgattgatccctcaccctagaatccacc 47808362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 53344751 - 53344789
Alignment:
Q  108 ggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||||||||| ||||| ||||||||||||||||||||    
T  53344751 ggtgagggacttgattgatccctcaccctagaatccacc 53344789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 14746098 - 14746041
Alignment:
Q  89 gttttcttcatggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||| ||| |||||||| || |||||| |||||||  ||||||||||||||||||||    
T  14746098 gtttttttcgtggtccaccggggagggatttaattggaccctcaccctagaatccacc 14746041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 146
Target Start/End: Original strand, 14746837 - 14746949
Alignment:
Q  33 tatatgttctcaattttatttccaataaatcgtaaccattgattcaatcaaatggtgttttcttcatggtccactggtgagggacttaattgagccctca 132  Q
    ||||||||  || ||||| ||| |||||||   ||||||  ||| |||| || |||||||| ||| |||||||| | |||||||||||||||  ||||||    
T  14746837 tatatgtttccatttttaattcgaataaatttgaaccatgtatttaatctaacggtgtttttttcgtggtccaccgatgagggacttaattggaccctca 14746936  T
Q  133 ccctagaatccacc 146  Q
     |||||||||||||    
T  14746937 -cctagaatccacc 14746949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 144
Target Start/End: Original strand, 48626127 - 48626160
Alignment:
Q  111 gagggacttaattgagccctcaccctagaatcca 144  Q
    ||||||||||||||| ||||||||||||||||||    
T  48626127 gagggacttaattgaaccctcaccctagaatcca 48626160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 31629404 - 31629340
Alignment:
Q  83 aatggtgttttcttcatggtccactggtgagggacttaattgagccctcaccctagaatccaccc 147  Q
    |||||| |||| |||||| ||||||||||||| |||||||||| | |||||| || ||| |||||    
T  31629404 aatggtattttgttcatgatccactggtgaggaacttaattgaacactcaccttaaaattcaccc 31629340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 38557241 - 38557277
Alignment:
Q  108 ggtgagggacttaattgagccctcaccctagaatcca 144  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  38557241 ggtgagggacttaatagagccctcaccctaaaatcca 38557277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 47809117 - 47809161
Alignment:
Q  102 tccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||| |||||||||||| ||||| ||||||||| ||||||||||    
T  47809117 tccaccggtgagggacttgattgatccctcaccccagaatccacc 47809161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 48190595 - 48190643
Alignment:
Q  98 atggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||||||||||||||||||| ||||| |  ||||| |||||||||||    
T  48190595 atggtccactggtgagggacttgattgaactttcaccttagaatccacc 48190643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 52924433 - 52924481
Alignment:
Q  98 atggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||| ||| |||||||||||||||||  |||||||| |||||||||||    
T  52924433 atggtgcaccggtgagggacttaattgctccctcaccttagaatccacc 52924481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 53344061 - 53344017
Alignment:
Q  102 tccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||| |||||||||||| ||||| |||||| |||||||||||||    
T  53344061 tccaccggtgagggacttgattgatccctcatcctagaatccacc 53344017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 6 - 146
Target Start/End: Complemental strand, 34941642 - 34941502
Alignment:
Q  6 agggacaaaattgtatgtgaaaatgcctatatgttctcaattttatttccaataaatcgtaaccattgattcaatcaaatggtgttttcttcatggtcca 105  Q
    |||||||| ||||||||| |||||| ||| |||||||||| ||||||| |||||||||  |||| |||||||||||||| ||| ||||||||||| ||||    
T  34941642 agggacaagattgtatgttaaaatgtctagatgttctcaactttattttcaataaatctcaaccgttgattcaatcaaacggtattttcttcatgatcca 34941543  T
Q  106 ctggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    || ||||||||||||||||| ||||||||||||||||||||    
T  34941542 ctagtgagggacttaattgaaccctcaccctagaatccacc 34941502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 6 - 142
Target Start/End: Original strand, 18363561 - 18363697
Alignment:
Q  6 agggacaaaattgtatgtgaaaatgcctatatgttctcaattttatttccaataaatcgtaaccattgattcaatcaaatggtgttttcttcatggtcca 105  Q
    |||||||| | ||||||| |||||| ||| |||||||||||||||||| |||||||||  |||||||||||||||| |||||| |||||||| |||||||    
T  18363561 agggacaagaatgtatgttaaaatgtctagatgttctcaattttattttcaataaatctcaaccattgattcaatcgaatggtattttcttcgtggtcca 18363660  T
Q  106 ctggtgagggacttaattgagccctcaccctagaatc 142  Q
    | ||||||| |||||||||| ||||||||||||||||    
T  18363661 ccggtgaggaacttaattgaaccctcaccctagaatc 18363697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 6 - 142
Target Start/End: Complemental strand, 36599367 - 36599231
Alignment:
Q  6 agggacaaaattgtatgtgaaaatgcctatatgttctcaattttatttccaataaatcgtaaccattgattcaatcaaatggtgttttcttcatggtcca 105  Q
    |||||||| | ||||||| |||||| ||| |||||||||||||||||| |||||||||  |||||||||||||||| |||||| |||||||| |||||||    
T  36599367 agggacaagaatgtatgttaaaatgtctagatgttctcaattttattttcaataaatctcaaccattgattcaatcgaatggtattttcttcgtggtcca 36599268  T
Q  106 ctggtgagggacttaattgagccctcaccctagaatc 142  Q
    | ||||||| |||||||||| ||||||||||||||||    
T  36599267 ccggtgaggaacttaattgaaccctcaccctagaatc 36599231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 6 - 146
Target Start/End: Original strand, 24666760 - 24666900
Alignment:
Q  6 agggacaaaattgtatgtgaaaatgcctatatgttctcaattttatttccaataaatcgtaaccattgattcaatcaaatggtgttttcttcatggtcca 105  Q
    |||||||| ||||||||| |||||| ||| ||||||||||| |||||| |||||||||  ||||||||||||||||||| ||| |||| |||||||||||    
T  24666760 agggacaagattgtatgttaaaatgtctagatgttctcaatcttattttcaataaatctcaaccattgattcaatcaaacggtatttttttcatggtcca 24666859  T
Q  106 ctggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |  | ||||||||||||||| ||||||||||| ||||||||    
T  24666860 ccagggagggacttaattgaaccctcaccctataatccacc 24666900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 2460905 - 2460847
Alignment:
Q  88 tgttttcttcatggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||| |||||||||||||||||||||||||| || |||||||| |||||||||||||    
T  2460905 tgttttattcatggtccactggtgagggacttagttcagccctcatcctagaatccacc 2460847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 99 - 146
Target Start/End: Complemental strand, 13924840 - 13924793
Alignment:
Q  99 tggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||    
T  13924840 tggtccaccggtgagggatttaattgagccctcaccctagaatccacc 13924793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 24666192 - 24666129
Alignment:
Q  83 aatggtgttttcttcatggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||| ||||  ||||||| ||| |||||||||||||||||| ||||||||||||||||||||    
T  24666192 aatggtatttttgtcatggttcaccggtgagggacttaattgatccctcaccctagaatccacc 24666129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 25055172 - 25055109
Alignment:
Q  83 aatggtgttttcttcatggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||||||||| ||||||||||||   ||||| |||||||||| ||||||||||||||||||||    
T  25055172 aatggtgtttttttcatggtccaccaatgaggaacttaattgaaccctcaccctagaatccacc 25055109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 47156760 - 47156638
Alignment:
Q  19 tatgtgaaaatgcctatatgttctcaattttatttccaataaatcgtaaccattgattcaatcaaatggtgttttcttcatggtccactggtgagggact 118  Q
    ||||||||||||  || ||||||| | ||| ||||  ||| |||| | | |||||||| |||||||||||||||| |   || ||||| | |||||||||    
T  47156760 tatgtgaaaatgtataaatgttctaattttaattttgaatcaatcttgatcattgattaaatcaaatggtgttttttgggtgctccaccgatgagggact 47156661  T
Q  119 taattgagccctcaccctagaat 141  Q
    ||||||| |||||||||||||||    
T  47156660 taattgaaccctcaccctagaat 47156638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 146
Target Start/End: Original strand, 47157317 - 47157427
Alignment:
Q  36 atgttctcaattttatttccaataaatcgtaaccattgattcaatcaaatggtgttttcttcatggtccactggtgagggacttaattgagccctcaccc 135  Q
    ||||||||| |||| ||| | || ||||  || |||||||||||||||||||| |||| |   || ||||| ||||||||| |||||||| |||||||||    
T  47157317 atgttctcatttttgttttcgatcaatctgaatcattgattcaatcaaatggtattttttaggtgctccaccggtgagggatttaattgaaccctcaccc 47157416  T
Q  136 tagaatccacc 146  Q
    |||||| ||||    
T  47157417 tagaattcacc 47157427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 8752384 - 8752272
Alignment:
Q  36 atgttctcaattttatttccaataaatcgtaaccattgattcaatcaaatggtgttttcttcatggtccactggtgagggacttaattgagccctcaccc 135  Q
    |||||||||| || |||| | |||||||   || ||||||| |||||||  || |||||||||||||| ||  |||| ||||||||||||| | ||||||    
T  8752384 atgttctcaacttaattttcgataaatctcgacaattgatttaatcaaacagtattttcttcatggtctaccagtgacggacttaattgagtcgtcaccc 8752285  T
Q  136 tagaatccaccct 148  Q
    ||||||| |||||    
T  8752284 tagaatctaccct 8752272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 14527577 - 14527624
Alignment:
Q  99 tggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||| ||| |||||||||||||||||| ||||||||||||||||||||    
T  14527577 tggttcaccggtgagggacttaattgatccctcaccctagaatccacc 14527624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 34451414 - 34451485
Alignment:
Q  75 ttcaatcaaatggtgttttcttcatggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||||||||||| |||| |  ||| | ||| ||||||| |||||||||| ||||||||||||||||||||    
T  34451414 ttcaatcaaatggtattttttatatgcttcaccggtgaggtacttaattgatccctcaccctagaatccacc 34451485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 146
Target Start/End: Complemental strand, 51386503 - 51386456
Alignment:
Q  99 tggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||| |||||||||||||||||||||| ||||||||||| ||||||||    
T  51386503 tggttcactggtgagggacttaattgaaccctcaccctaaaatccacc 51386456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 145
Target Start/End: Complemental strand, 20143326 - 20143280
Alignment:
Q  99 tggtccactggtgagggacttaattgagccctcaccctagaatccac 145  Q
    |||| ||| ||||||||||||| ||||||||||||||||||||||||    
T  20143326 tggtacaccggtgagggacttagttgagccctcaccctagaatccac 20143280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 21527035 - 21527073
Alignment:
Q  108 ggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  21527035 ggtgagggacttaatagagccctcaccctagaatccacc 21527073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 25725808 - 25725858
Alignment:
Q  98 atggtccactggtgagggacttaattgagccctcaccctagaatccaccct 148  Q
    ||||||||| |||||||||||||||||  ||||||||||||| ||||||||    
T  25725808 atggtccaccggtgagggacttaattgctccctcaccctagactccaccct 25725858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 144
Target Start/End: Original strand, 53778356 - 53778461
Alignment:
Q  39 ttctcaattttatttccaataaatcgtaaccattgattcaatcaaatggtgttttcttcatggtccactggtgagggacttaattgagccctcaccctag 138  Q
    |||||||| ||||||  || |||||| | ||||| ||| |||| || | | ||| |||| |||||||| |||||||||||||| ||  ||||||||||||    
T  53778356 ttctcaatattatttttaacaaatcggatccattcatttaatctaacgatatttccttcgtggtccaccggtgagggacttaaatggaccctcaccctag 53778455  T
Q  139 aatcca 144  Q
    ||||||    
T  53778456 aatcca 53778461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 34450859 - 34450815
Alignment:
Q  102 tccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||| |||||||||||||||||| ||||||||||||||| ||||    
T  34450859 tccaccggtgagggacttaattgatccctcaccctagaattcacc 34450815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 52129458 - 52129418
Alignment:
Q  109 gtgagggacttaattgagccctcaccctagaatccacccta 149  Q
    ||||||||||||||||| |||||||| ||||||||||||||    
T  52129458 gtgagggacttaattgaaccctcaccttagaatccacccta 52129418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 6057000 - 6057047
Alignment:
Q  99 tggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||||| ||||||||||||| | || ||||||||||||||||||||    
T  6057000 tggtccaccggtgagggacttagtagaaccctcaccctagaatccacc 6057047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 26354233 - 26354280
Alignment:
Q  99 tggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||||||  ||||||||||||||||| |||||||||||||| |||||    
T  26354233 tggtccacctgtgagggacttaattgaaccctcaccctagaacccacc 26354280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 35606040 - 35605989
Alignment:
Q  97 catggtccactggtgagggacttaattgagccctcaccctagaatccaccct 148  Q
    ||||||||||   |||||||||||||||  ||||||||||||||||||||||    
T  35606040 catggtccaccaatgagggacttaattgctccctcaccctagaatccaccct 35605989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 142
Target Start/End: Original strand, 26393408 - 26393442
Alignment:
Q  108 ggtgagggacttaattgagccctcaccctagaatc 142  Q
    ||||||||||||||| |||||||||||||||||||    
T  26393408 ggtgagggacttaatagagccctcaccctagaatc 26393442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 42792813 - 42792775
Alignment:
Q  108 ggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  42792813 ggtgagggacttaattggaccctcaccctagaatccacc 42792775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 144
Target Start/End: Original strand, 47764069 - 47764147
Alignment:
Q  66 aaccattgattcaatcaaatggtgttttcttcatggtccactggtgagggacttaattgagccctcaccctagaatcca 144  Q
    |||| |||||| ||||  ||||| | || |||||||||||| ||||||||| || ||||| |||| |||||||||||||    
T  47764069 aacctttgattaaatcttatggtatatttttcatggtccaccggtgagggatttgattgaacccttaccctagaatcca 47764147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 146
Target Start/End: Original strand, 21281096 - 21281209
Alignment:
Q  33 tatatgttctcaattttatttccaataaatcgtaaccattgattcaatcaaatggtgttttcttcatggtccactggtgagggacttaattgagccctca 132  Q
    |||||||||||| ||||| ||  |||||||  |||||||  |||  ||| || ||||||||  || |||||||| | |||||||  ||||||  ||||||    
T  21281096 tatatgttctcacttttaatttgaataaattttaaccatctattttatctaacggtgtttttctcgtggtccaccgatgagggatctaattggaccctca 21281195  T
Q  133 ccctagaatccacc 146  Q
    ||||||||||||||    
T  21281196 ccctagaatccacc 21281209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 66 - 146
Target Start/End: Complemental strand, 24565653 - 24565573
Alignment:
Q  66 aaccattgattcaatcaaatggtgttttcttcatggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||||| ||| |||| |||||| |||| |||||||||||| ||||||||| |||||||| ||||||||||||||||||||    
T  24565653 aaccattaattaaatctaatggtattttgttcatggtccaccggtgagggatttaattgaaccctcaccctagaatccacc 24565573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 66 - 146
Target Start/End: Complemental strand, 24606689 - 24606609
Alignment:
Q  66 aaccattgattcaatcaaatggtgttttcttcatggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||||| ||| |||| |||||| |||| |||||||||||| ||||||||| |||||||| ||||||||||||||||||||    
T  24606689 aaccattaattaaatctaatggtattttgttcatggtccaccggtgagggatttaattgaaccctcaccctagaatccacc 24606609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 67 - 146
Target Start/End: Original strand, 2029016 - 2029095
Alignment:
Q  67 accattgattcaatcaaatggtgttttcttcatggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||||||||||| ||||| |||||| ||  || | ||| |||||||||||||||||||||||||||||||||||||||    
T  2029016 accattgattcaattaaatgttgttttatttgtgcttcaccggtgagggacttaattgagccctcaccctagaatccacc 2029095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 29595595 - 29595643
Alignment:
Q  99 tggtccactggtgagggacttaattgagccctcaccctagaatccaccc 147  Q
    |||| |||||||||||||||||||||| ||||||| |||||||||||||    
T  29595595 tggtacactggtgagggacttaattgaaccctcacgctagaatccaccc 29595643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 40372152 - 40372208
Alignment:
Q  90 ttttcttcatggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||| ||||| |||||| ||||||| |||||||||| ||||||||||||||||||||    
T  40372152 ttttattcatagtccaccggtgaggaacttaattgaaccctcaccctagaatccacc 40372208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 145
Target Start/End: Complemental strand, 15561458 - 15561411
Alignment:
Q  98 atggtccactggtgagggacttaattgagccctcaccctagaatccac 145  Q
    ||||||||| ||||||||||||| | ||||||||||||||||||||||    
T  15561458 atggtccaccggtgagggacttagtagagccctcaccctagaatccac 15561411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 146
Target Start/End: Original strand, 35524874 - 35524925
Alignment:
Q  95 ttcatggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||||||||| ||||||  |||||||||| ||||||||||||||||||||    
T  35524874 ttcatggtccaccggtgagaaacttaattgatccctcaccctagaatccacc 35524925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 39937907 - 39937954
Alignment:
Q  99 tggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||||| |||||||||||||| ||| ||||||||||||||||||||    
T  39937907 tggtccaccggtgagggacttaactgaaccctcaccctagaatccacc 39937954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 27345929 - 27345967
Alignment:
Q  108 ggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  27345929 ggtgagggacttaattgaaccctcaccctagaatccacc 27345967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 4095162 - 4095110
Alignment:
Q  95 ttcatggtccactggtgagggacttaattgagccctcaccctagaatccaccct 148  Q
    |||||||||||| |||||| |||||||||||  |||||||||||||||||||||    
T  4095162 ttcatggtccaccggtgagagacttaattga-tcctcaccctagaatccaccct 4095110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 20476126 - 20476167
Alignment:
Q  108 ggtgagggacttaattgagccctcaccctagaatccacccta 149  Q
    |||||||||||||||||| ||||||||||| |||||||||||    
T  20476126 ggtgagggacttaattgatccctcaccctaaaatccacccta 20476167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 146
Target Start/End: Original strand, 23253458 - 23253534
Alignment:
Q  71 ttgattcaatcaaatggtgttttctt-catggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||| |||| |||||| |||| || | |||| ||| |||||||||||||||||  ||||||||||||||||||||    
T  23253458 ttgattaaatctaatggtttttttttacgtggttcaccggtgagggacttaattggaccctcaccctagaatccacc 23253534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 146
Target Start/End: Original strand, 5346295 - 5346330
Alignment:
Q  111 gagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||||||||| ||||||||||||||||||||||||    
T  5346295 gagggacttaagtgagccctcaccctagaatccacc 5346330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 146
Target Start/End: Complemental strand, 33086784 - 33086729
Alignment:
Q  91 tttcttcatggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||||||| | ||| ||||| |||||||||||| |||||| |||||||||||||    
T  33086784 tttcttcatgcttcaccggtgaaggacttaattgatccctcatcctagaatccacc 33086729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 146
Target Start/End: Complemental strand, 35524169 - 35524122
Alignment:
Q  99 tggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||||| |||||||||||||||||| | |||| |||||||||||||    
T  35524169 tggtccaccggtgagggacttaattgaactctcatcctagaatccacc 35524122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 146
Target Start/End: Complemental strand, 39466932 - 39466885
Alignment:
Q  99 tggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||||| |||||||||||||||||  ||||||||||||||| ||||    
T  39466932 tggtccaccggtgagggacttaattggaccctcaccctagaattcacc 39466885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 146
Target Start/End: Complemental strand, 39936294 - 39936255
Alignment:
Q  107 tggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  39936294 tggtgagggacttaattgaaccctcaccttagaatccacc 39936255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 16195140 - 16195177
Alignment:
Q  109 gtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  16195140 gtgatggacttaattgatccctcaccctagaatccacc 16195177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 38129174 - 38129125
Alignment:
Q  98 atggtccactggtgagggacttaattgagccctcaccctagaatccaccc 147  Q
    ||||| ||| |||||||||||||||||  |||||||| ||||||||||||    
T  38129174 atggtacaccggtgagggacttaattgctccctcaccttagaatccaccc 38129125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 2028405 - 2028337
Alignment:
Q  78 aatcaaatggtgttttcttcatggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||||||||||||||  |  |||||||  || |||||||||| |||| ||||||||||| ||||||||    
T  2028405 aatcaaatggtgtttttgtggtggtccatcggcgagggacttagttgaaccctcaccctaaaatccacc 2028337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 67 - 146
Target Start/End: Original strand, 46491657 - 46491736
Alignment:
Q  67 accattgattcaatcaaatggtgttttcttcatggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||||||| ||||||||||| |||| || || |||||| ||||||||||||| |||| ||||||||||||||||||||    
T  46491657 accattgatttaatcaaatggtatttttttgatagtccaccggtgagggacttagttgaaccctcaccctagaatccacc 46491736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 146
Target Start/End: Complemental strand, 767249 - 767136
Alignment:
Q  33 tatatgttctcaattttatttccaataaatcgtaaccattgattcaatcaaatggtgttttcttcatggtccactggtgagggacttaattgagccctca 132  Q
    ||||||||  || ||||| ||| ||||||||  ||||||  ||| |||| || |||||||| |||||| ||||| |||||||||||||||||  ||||||    
T  767249 tatatgtttccatttttaattcgaataaatctgaaccatgtatttaatctaacggtgtttttttcatgatccaccggtgagggacttaattggaccctca 767150  T
Q  133 ccctagaatccacc 146  Q
    ||||||||||||||    
T  767149 ccctagaatccacc 767136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 41965717 - 41965826
Alignment:
Q  38 gttctcaattttatttccaataaatcgtaaccattgattcaatcaaatggtgttttcttcatggtccactggtgagggacttaattgagccctcacccta 137  Q
    ||||||||| ||||||  || |||||| ||||||| |||  ||| || ||| ||| |||| |||||||| |||||||||||||||||  |||||||||||    
T  41965717 gttctcaatattatttttaacaaatcggaaccattcatttcatctaacggtatttccttcgtggtccaccggtgagggacttaattggaccctcacccta 41965816  T
Q  138 gaatccaccc 147  Q
    ||||||||||    
T  41965817 gaatccaccc 41965826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 66 - 146
Target Start/End: Original strand, 36611462 - 36611542
Alignment:
Q  66 aaccattgattcaatcaaatggtgttttcttcatggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||||| ||| |||| |||||| |||| |||||||||||| |||||| || |||||||| ||||||||||||||||||||    
T  36611462 aaccattaattaaatctaatggtattttgttcatggtccaccggtgagagatttaattgaaccctcaccctagaatccacc 36611542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 95 - 146
Target Start/End: Original strand, 41358968 - 41359019
Alignment:
Q  95 ttcatggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  41358968 ttcatggtccactggtgatggacttaattgatccctcaccctagaatccacc 41359019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 146
Target Start/End: Complemental strand, 24873841 - 24873751
Alignment:
Q  56 aataaatcgtaaccattgattcaatcaaatggtgttttcttcatggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||||||  ||||| | ||| |||| | ||||||||| |||||||||||||| |||||||| ||||||  ||||||||||||||||||||    
T  24873841 aataaatctaaaccacttatttaatctattggtgtttttttcatggtccactgatgagggacctaattggaccctcaccctagaatccacc 24873751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 28007206 - 28007157
Alignment:
Q  97 catggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||||||| |||||||||||||||||  ||||||||||||||||||||    
T  28007206 catggtccaccggtgagggacttaattgctccctcaccctagaatccacc 28007157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 30581267 - 30581315
Alignment:
Q  99 tggtccactggtgagggacttaattgagccctcaccctagaatccaccc 147  Q
    |||| |||||||||||||||||||||| ||||||||||||||| |||||    
T  30581267 tggttcactggtgagggacttaattgaaccctcaccctagaattcaccc 30581315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 41617243 - 41617192
Alignment:
Q  95 ttcatggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||||||||| |||||||||||||||||| | ||||| ||||||||||||    
T  41617243 ttcatggtccaccggtgagggacttaattgatcactcactctagaatccacc 41617192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 3315473 - 3315511
Alignment:
Q  108 ggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  3315473 ggtgagggacttaattgagccctcaccttagaatccacc 3315511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 142
Target Start/End: Original strand, 40427521 - 40427625
Alignment:
Q  36 atgttctcaattttatttccaataaatcgtaaccattgattcaatcaaatggtgttttcttcatggtccactggtgagggacttaattgagccctcaccc 135  Q
    |||||| || |||||||| ||||||||| | ||| || ||| |||| |||||| ||||  |  ||||||||||||||||||||| ||||| |||||||||    
T  40427521 atgttcacacttttattttcaataaatcttgaccgtt-attgaatctaatggtatttttgttctggtccactggtgagggactt-attgatccctcaccc 40427618  T
Q  136 tagaatc 142  Q
    |||||||    
T  40427619 tagaatc 40427625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 145
Target Start/End: Complemental strand, 10590408 - 10590299
Alignment:
Q  36 atgttctcaattttatttccaataaatcgtaaccattgattcaatcaaatggtgttttcttcatggtccactggtgagggacttaattgagccctcaccc 135  Q
    |||||||| |||||||||  ||  |||| | ||| ||||||||||| |||| |||||| ||  || | ||| | |||||||||||||||| | |||||||    
T  10590408 atgttctcgattttatttttaaataatcttgacccttgattcaatctaatgatgtttttttggtgcttcaccgatgagggacttaattgaactctcaccc 10590309  T
Q  136 tagaatccac 145  Q
    ||||||||||    
T  10590308 tagaatccac 10590299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 44876935 - 44876980
Alignment:
Q  99 tggtccactggtgagggacttaattgagccctcaccctagaatcca 144  Q
    |||||||  |||||||||||||||||| ||||||||||||||||||    
T  44876935 tggtccatcggtgagggacttaattgatccctcaccctagaatcca 44876980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 767958 - 768014
Alignment:
Q  90 ttttcttcatggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||| ||| |||||||| |||||||||||||||||  ||||||||||| ||||||||    
T  767958 tttttttcgtggtccaccggtgagggacttaattggaccctcaccctaaaatccacc 768014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 3315002 - 3314954
Alignment:
Q  99 tggtccactggtgagggacttaattgagccctcaccctagaatccaccc 147  Q
    |||| ||| |||||||||||||||||| |||||||| ||||||||||||    
T  3315002 tggtacaccggtgagggacttaattgaaccctcaccgtagaatccaccc 3314954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 17114181 - 17114145
Alignment:
Q  110 tgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||||||||||||| ||||||||||||||||||||    
T  17114181 tgagggacttaattgaaccctcaccctagaatccacc 17114145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 41358367 - 41358311
Alignment:
Q  90 ttttcttcatggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||| |||||||||||  |||||||||||||||||| |||||| || ||||||||||    
T  41358367 ttttattcatggtccatcggtgagggacttaattgatccctcatccaagaatccacc 41358311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 41617982 - 41618030
Alignment:
Q  99 tggtccactggtgagggacttaattgagccctcaccctagaatccaccc 147  Q
    ||||||||||||||| ||||||||||  ||||||| |||||||||||||    
T  41617982 tggtccactggtgagagacttaattggaccctcactctagaatccaccc 41618030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 42818557 - 42818601
Alignment:
Q  102 tccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||| |||||||||||||||||| ||||||||||||||| ||||    
T  42818557 tccaccggtgagggacttaattgaaccctcaccctagaattcacc 42818601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 24874579 - 24874626
Alignment:
Q  99 tggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||||| | |||||||| ||||||| ||||||||||||||||||||    
T  24874579 tggtccaccgatgagggacctaattgaaccctcaccctagaatccacc 24874626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 36611598 - 36611556
Alignment:
Q  99 tggtccactggtgagggacttaattgagccctcaccctagaat 141  Q
    |||| ||| |||||||||||||||||| |||||||||||||||    
T  36611598 tggttcaccggtgagggacttaattgaaccctcaccctagaat 36611556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 37783482 - 37783524
Alignment:
Q  99 tggtccactggtgagggacttaattgagccctcaccctagaat 141  Q
    |||||||| ||||||||||||| | ||||||||||||||||||    
T  37783482 tggtccaccggtgagggacttagtagagccctcaccctagaat 37783524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 3850367 - 3850415
Alignment:
Q  99 tggtccactggtgagggacttaattgagccctcaccctagaatccaccc 147  Q
    |||||||| ||||||||| |||||||  ||||||||||||| |||||||    
T  3850367 tggtccaccggtgagggatttaattggcccctcaccctagattccaccc 3850415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 30580673 - 30580633
Alignment:
Q  108 ggtgagggacttaattgagccctcaccctagaatccaccct 148  Q
    |||||| ||||||||| | ||||||||||||||||||||||    
T  30580673 ggtgagagacttaattaaaccctcaccctagaatccaccct 30580633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 41965148 - 41965112
Alignment:
Q  110 tgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||||||||||||  ||||||||||||||||||||    
T  41965148 tgagggacttaattggaccctcaccctagaatccacc 41965112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 44120406 - 44120358
Alignment:
Q  98 atggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||| ||| |||||||||||||||||  |||||||| |||||||||||    
T  44120406 atggtacaccggtgagggacttaattgctccctcaccttagaatccacc 44120358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 67 - 146
Target Start/End: Original strand, 127704 - 127783
Alignment:
Q  67 accattgattcaatcaaatggtgttttcttcatggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||||||||||||||||||||||||| ||  || | ||| ||||| |||||||||||| ||||||||||||||||||||    
T  127704 accattgattcaatcaaatggtgttttatttgtgcttcaccggtgaaggacttaattgaaccctcaccctagaatccacc 127783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 144
Target Start/End: Complemental strand, 19697496 - 19697358
Alignment:
Q  6 agggacaaaattgtatgtgaaaatgcctatatgttctcaattttatttccaataaatcgtaaccattgattcaatcaaatggtgttttcttcatggtcca 105  Q
    |||||||| ||||||||| |||||| ||| |||||||||||||| ||| ||| |||||  || ||||||||||||||||  || |||| ||||||||| |    
T  19697496 agggacaagattgtatgttaaaatgtctagatgttctcaatttt-ttttcaaaaaatctcaaacattgattcaatcaaacagtattttattcatggtcta 19697398  T
Q  106 c-tggtgagggacttaattgagccctcaccctagaatcca 144  Q
    | | |||||  |||||||||| |  |||||||||||||||    
T  19697397 cttagtgagaaacttaattgatctttcaccctagaatcca 19697358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 127114 - 127033
Alignment:
Q  67 accattgattcaatcaaatggtgttttcttcatg--gtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||||||| ||||||||||| |||| ||  ||  |||||||| ||||||||||| |||| ||||||||||||||||||||    
T  127114 accattgatttaatcaaatggtattttttttttgtggtccactgatgagggacttagttgaaccctcaccctagaatccacc 127033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 7754968 - 7755016
Alignment:
Q  99 tggtccactggtgagggacttaattgagccctcaccctagaatccaccc 147  Q
    |||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  7754968 tggtccaccggtgaaggacttaattgatccctcaccctagaatccaccc 7755016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 30201988 - 30202036
Alignment:
Q  98 atggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||||||| |||||||||||||||||  |||||||| |||||||||||    
T  30201988 atggtccaccggtgagggacttaattgctccctcaccttagaatccacc 30202036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 134
Target Start/End: Original strand, 38138695 - 38138763
Alignment:
Q  66 aaccattgattcaatcaaatggtgttttcttcatggtccactggtgagggacttaattgagccctcacc 134  Q
    ||||||| ||| ||||||||||| |||| |||||| |||||  |||||||||||||||||  |||||||    
T  38138695 aaccattaattaaatcaaatggtattttattcatgatccaccagtgagggacttaattgaatcctcacc 38138763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 44987532 - 44987588
Alignment:
Q  91 tttcttcatggtccactggtgagggacttaattgagccctcaccctagaatccaccc 147  Q
    |||||||||| | |||  ||||| ||||||||||| |||||||||||||||||||||    
T  44987532 tttcttcatgcttcaccagtgagagacttaattgatccctcaccctagaatccaccc 44987588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 20606922 - 20606969
Alignment:
Q  99 tggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||| ||| |||||||||||||||||| ||||||||||||||| ||||    
T  20606922 tggttcaccggtgagggacttaattgaaccctcaccctagaattcacc 20606969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 29388958 - 29388996
Alignment:
Q  108 ggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||||||||||||| |||||||||||||| ||||||||    
T  29388958 ggtgagggacttaatagagccctcaccctaaaatccacc 29388996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 44296907 - 44296858
Alignment:
Q  99 tggtccactggtgagggacttaattgagccctcaccctagaatccaccct 148  Q
    ||||||||  ||||||||||||||||  ||||||||||||||| ||||||    
T  44296907 tggtccaccagtgagggacttaattggaccctcaccctagaattcaccct 44296858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 141
Target Start/End: Original strand, 44297424 - 44297457
Alignment:
Q  108 ggtgagggacttaattgagccctcaccctagaat 141  Q
    |||||||||||||||||| |||||||||||||||    
T  44297424 ggtgagggacttaattgaaccctcaccctagaat 44297457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 44986848 - 44986811
Alignment:
Q  110 tgagggacttaattgagccctcaccctagaatccaccc 147  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  44986848 tgagggacttaattgatccctcaccctagaattcaccc 44986811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 2656496 - 2656536
Alignment:
Q  110 tgagggacttaattgagccctcaccctagaatccaccctac 150  Q
    |||||||||| || |||||||||| ||||||||||||||||    
T  2656496 tgagggacttgatagagccctcactctagaatccaccctac 2656536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 18537497 - 18537541
Alignment:
Q  102 tccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||| |||||||||||||||||| |||||| | |||||||||||    
T  18537497 tccaccggtgagggacttaattgaaccctcatcatagaatccacc 18537541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 95 - 146
Target Start/End: Original strand, 22632965 - 22633016
Alignment:
Q  95 ttcatggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  22632965 ttcatggtccaccggtgagggacttaattgatccctcaccctagaatccacc 22633016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 145
Target Start/End: Complemental strand, 22632373 - 22632323
Alignment:
Q  95 ttcatggtccactggtgagggacttaattgagccctcaccctagaatccac 145  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  22632373 ttcatggtccaccggtgagggacttaattgatccctcaccctagaatccac 22632323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 146
Target Start/End: Complemental strand, 5434140 - 5434032
Alignment:
Q  38 gttctcaattttatttccaataaatcgtaaccattgattcaatcaaatggtgttttcttcatggtccactggtgagggacttaattgagccctcacccta 137  Q
    ||||||||| ||||||  || |||||| ||||||| |||  ||| || ||| ||| |||| |||||||| ||||| |||||||||||  |||||||||||    
T  5434140 gttctcaatattatttttaacaaatcggaaccattcatttcatccaacggtatttccttcgtggtccaccggtgaaggacttaattggaccctcacccta 5434041  T
Q  138 gaatccacc 146  Q
    |||||||||    
T  5434040 gaatccacc 5434032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 16911046 - 16911094
Alignment:
Q  98 atggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  16911046 atggtacaccggtgagggacttaattgagccctcaccctagaatccacc 16911094  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 146
Target Start/End: Complemental strand, 42094064 - 42094009
Alignment:
Q  91 tttcttcatggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||||||| | ||| |||||||||||||||||| ||||||||||||||||||||    
T  42094064 tttcttcatgcttcaccggtgagggacttaattgatccctcaccctagaatccacc 42094009  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 149
Target Start/End: Original strand, 26132068 - 26132184
Alignment:
Q  33 tatatgttctcaattttatttccaataaatcgtaaccattgattcaatcaaatggtgttttcttcatggtccactggtgagggacttaattgagccctca 132  Q
    |||||||||||| ||||| || ||||||||| |||||||  |||  ||| || ||||||||  || ||||||||  ||||||||| ||||||  ||||||    
T  26132068 tatatgttctcacttttaatttcaataaatcttaaccatctattttatctaacggtgtttttctcgtggtccaccagtgagggacctaattggaccctca 26132167  T
Q  133 ccctagaatccacccta 149  Q
    || || |||||||||||    
T  26132168 ccttaaaatccacccta 26132184  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 26847173 - 26847097
Alignment:
Q  70 attgattcaatcaaatggtgttttcttcatggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||||| |||| |||||| |||| | | |||| ||| |||||||||||||||||  ||||||||||||||||||||    
T  26847173 attgattaaatctaatggtattttttccgtggttcaccggtgagggacttaattggaccctcaccctagaatccacc 26847097  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 4402288 - 4402338
Alignment:
Q  99 tggtccactggtgagggacttaattgagccctcaccctagaatccacccta 149  Q
    |||| ||| ||||||||||||||| || |||||||||||||||||||||||    
T  4402288 tggttcaccggtgagggacttaatagaaccctcaccctagaatccacccta 4402338  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 146
Target Start/End: Original strand, 36402960 - 36403073
Alignment:
Q  33 tatatgttctcaattttatttccaataaatcgtaaccattgattcaatcaaatggtgttttcttcatggtccactggtgagggacttaattgagccctca 132  Q
    |||||||||||| ||||| ||  |||||||| |||||||  |||  ||| ||  |||||||  || |||||||| |||||||||| ||||||  ||||||    
T  36402960 tatatgttctcacttttaatttgaataaatcttaaccatctattttatctaactgtgtttttctcgtggtccaccggtgagggacctaattggaccctca 36403059  T
Q  133 ccctagaatccacc 146  Q
    | ||||||||||||    
T  36403060 ctctagaatccacc 36403073  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 9277786 - 9277830
Alignment:
Q  102 tccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||| ||||||||||||||||||  ||||||||||||||||||||    
T  9277786 tccattggtgagggacttaattgctccctcaccctagaatccacc 9277830  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 32566490 - 32566563
Alignment:
Q  6 agggacaaaattgtatgtgaaaatgcctatatgttctcaattttatttccaataaatcgtaaccattgattcaatc 81  Q
    |||||||| ||||||||||||||||  || |||||||||||||  ||| ||||||||| | |||||||| ||||||    
T  32566490 agggacaagattgtatgtgaaaatgtttagatgttctcaattt--ttttcaataaatcttgaccattgaatcaatc 32566563  T

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Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 146
Target Start/End: Complemental strand, 36402281 - 36402201
Alignment:
Q  66 aaccattgattcaatcaaatggtgttttcttcatggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||||| ||| |||| | ||||||||| ||| |||||||| |||| ||||| ||||||  ||||||||||| ||||||||    
T  36402281 aaccatttatttaatctattggtgtttttttcgtggtccaccggtgtgggacctaattggaccctcaccctaaaatccacc 36402201  T

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Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 146
Target Start/End: Complemental strand, 27243501 - 27243446
Alignment:
Q  91 tttcttcatggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||||| |||||||| |||||||||||||||||| ||||| || || ||||||||    
T  27243501 tttcttcgtggtccaccggtgagggacttaattgatccctcgccttataatccacc 27243446  T

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Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 146
Target Start/End: Complemental strand, 27255076 - 27255021
Alignment:
Q  91 tttcttcatggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||||| |||||||| |||||||||||||||||| ||||| || || ||||||||    
T  27255076 tttcttcgtggtccaccggtgagggacttaattgatccctcgccttataatccacc 27255021  T

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Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 42094737 - 42094792
Alignment:
Q  91 tttcttcatggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||||||| | ||  |||||||||||||||||| ||||||||||||||| ||||    
T  42094737 tttcttcatgcttcatcggtgagggacttaattgatccctcaccctagaattcacc 42094792  T

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Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 31713869 - 31713918
Alignment:
Q  99 tggtccactggtgagggacttaattgagccctcaccctagaatccaccct 148  Q
    |||||||| ||||||||||||  | || ||||||||||||||||||||||    
T  31713869 tggtccacgggtgagggacttgttagaaccctcaccctagaatccaccct 31713918  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 5434765 - 5434817
Alignment:
Q  94 cttcatggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    ||||||||||||| | |||||||||||||||  | ||||| ||||||||||||    
T  5434765 cttcatggtccaccgatgagggacttaattggactctcactctagaatccacc 5434817  T

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Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 16718381 - 16718413
Alignment:
Q  102 tccactggtgagggacttaattgagccctcacc 134  Q
    ||||| |||||||||||||||||||||||||||    
T  16718381 tccaccggtgagggacttaattgagccctcacc 16718413  T

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Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 26847722 - 26847770
Alignment:
Q  99 tggtccactggtgagggacttaattgagccctcaccctagaatccaccc 147  Q
    |||| ||| ||||||| |||||||||| |||||| ||||||||||||||    
T  26847722 tggttcaccggtgaggaacttaattgatccctcatcctagaatccaccc 26847770  T

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Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 42663997 - 42664045
Alignment:
Q  98 atggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||||||  ||||||||||||||||| ||||||||||| ||| ||||    
T  42663997 atggtccaccagtgagggacttaattgaaccctcaccctaaaattcacc 42664045  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 146
Target Start/End: Original strand, 16718933 - 16719042
Alignment:
Q  38 gttctcaatttt-atttccaataaatcgtaaccattgattcaatcaaatggtgttttcttcatggtccactggtgagggacttaattgagccctcaccct 136  Q
    |||||||||||| |||| ||| || || ||||| || ||| |||| || | | |||| |||||||||||| |||||||||||||||||| || |||||||    
T  16718933 gttctcaatttttattttcaaaaagtcttaacctttaattaaatctaacgatattttgttcatggtccaccggtgagggacttaattgatccgtcaccct 16719032  T
Q  137 agaatccacc 146  Q
    ||||||||||    
T  16719033 agaatccacc 16719042  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 5310486 - 5310449
Alignment:
Q  110 tgagggacttaattgagccctcaccctagaatccaccc 147  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  5310486 tgagggacttatttgagccctcatcctagaatccaccc 5310449  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 10966367 - 10966428
Alignment:
Q  85 tggtgttttcttcatggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||||||  || |||||||| |||||||||| ||||||  || |||||||||||||||||    
T  10966367 tggtgtttttctcgtggtccaccggtgagggacctaattggaccttcaccctagaatccacc 10966428  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 5312289 - 5312241
Alignment:
Q  98 atggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||| ||||||||||||||||||||||| |||||||  |||||| ||||    
T  5312289 atggaccactggtgagggacttaattgaaccctcactgtagaattcacc 5312241  T

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Target: scaffold0627 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 146
Target Start/End: Complemental strand, 6511 - 6464
Alignment:
Q  99 tggtccactggtgagggacttaattgagccctcaccctagaatccacc 146  Q
    |||||||  |||||||||||||||||| |||||||||||||| |||||    
T  6511 tggtccatcggtgagggacttaattgaaccctcaccctagaacccacc 6464  T

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