View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9772_low_69 (Length: 239)
Name: NF9772_low_69
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9772_low_69 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 23938758 - 23938973
Alignment:
| Q |
11 |
cgatttaaatttgcttaattttcattattgttatcaaacaaaccnnnnnnn---ttgttcaattaagtggcaaatactattcaatggccttttatgtatc |
107 |
Q |
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| T |
23938758 |
cgatttaaatttgcttaattttcgttattgttatcaaacaaaccaaaaaaaaaattgttcaattaagtggcaaatactattcaatggccttttatgtatc |
23938857 |
T |
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| Q |
108 |
atcccactttgtttctcctgctttnnnnnnngtgattcctttatattgtaggtttgattgtcattaattaggactcttaatataggacgtccctacactc |
207 |
Q |
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| T |
23938858 |
atcccactttgtttctcctgctttaaaaaaagtgtttcctttatattgtaggtttgattgtcattaattaggactcttaatatagggcgtccctacactc |
23938957 |
T |
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| Q |
208 |
aatcaaaacaaaatat |
223 |
Q |
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|||||||||||||||| |
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| T |
23938958 |
aatcaaaacaaaatat |
23938973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 40455318 - 40455351
Alignment:
| Q |
21 |
ttgcttaattttcattattgttatcaaacaaacc |
54 |
Q |
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| T |
40455318 |
ttgcttaattttcattattgttatcaaacaaacc |
40455351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 48893639 - 48893684
Alignment:
| Q |
7 |
aaaccgatttaaatttgcttaattttcattattgttatcaaacaaa |
52 |
Q |
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| T |
48893639 |
aaaccgattttaatttgcttaattttcataattgttatccaacaaa |
48893684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 7747868 - 7747900
Alignment:
| Q |
20 |
tttgcttaattttcattattgttatcaaacaaa |
52 |
Q |
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||||||||||||||||||||| ||||||||||| |
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| T |
7747868 |
tttgcttaattttcattattgctatcaaacaaa |
7747900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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