View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9772_low_7 (Length: 476)

Name: NF9772_low_7
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9772_low_7
NF9772_low_7
[»] chr7 (1 HSPs)
chr7 (1-459)||(12613529-12613987)
[»] chr4 (1 HSPs)
chr4 (1-459)||(16715133-16715590)
[»] chr3 (6 HSPs)
chr3 (282-347)||(6113403-6113468)
chr3 (282-347)||(6120295-6120360)
chr3 (270-347)||(6091276-6091353)
chr3 (257-346)||(31290540-31290629)
chr3 (282-346)||(6069057-6069121)
chr3 (283-315)||(10658307-10658339)
[»] chr8 (1 HSPs)
chr8 (259-304)||(32607656-32607701)
[»] scaffold0003 (1 HSPs)
scaffold0003 (264-312)||(103087-103135)
[»] chr6 (1 HSPs)
chr6 (257-309)||(3067742-3067794)
[»] chr5 (1 HSPs)
chr5 (280-312)||(26316091-26316123)


Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Original strand, 12613529 - 12613987
Alignment:
Q  1 tcctaaaacgattcaacctttggaatgctaagaaaacatccacaagagaattggagtgacccaaaagtaggacatttctcgaattataacacatatgggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12613529 tcctaaaacgattcaacctttggaatgctaagaaaacatccacaagagaattggagtgacccaaaagtaggacatttctcgaattataacacaaatgggt 12613628  T
Q  101 tcagcccctaccagctcatgggttcttaaagtacttcacattttcaggcttgatgattggggcgttcttgaatagactaggggatcgacccatatcctag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12613629 tcagcccctaccagctcatgggttcttaaagtacttcacattttcaggcttgatgattggggcgttcttgaatagactaggggatcgacccatatcctag 12613728  T
Q  201 ctactcttaaaggataaaaggctactcaaatgtctttaaaattaaaagcgaacaaaacaatcaaaatattattatttattgtcttatttcatttcattac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12613729 ctactcttaaaggataaaaggctactcaaatgtctttaaaattaaaagcgaacaaaacattcaaaatattattatttattgtcttatttcatttcattac 12613828  T
Q  301 catcatcttagattaaaattccataaatacatggttcttgaaattagnnnnnnnnnnnnnttaaactattggagtgccaacacaataacaaaataacatc 400  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||    
T  12613829 catcatcttagattagaattccataaatacatggttcttgaaattagaaaaaagaaaaaattaaactattggagtgccaacacaataacaaaataacatc 12613928  T
Q  401 tcatggaaaattcaagaaggaatataatttgtgtatgctcttaggtatggcaaacatac 459  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12613929 tcatggaaaattcaagaaggaatataatttgtgtatgctcttaggtatggcaaacatac 12613987  T

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Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 459
Target Start/End: Original strand, 16715133 - 16715590
Alignment:
Q  1 tcctaaaacgattcaacctttggaatgctaagaaaacatccacaagagaattggagtgacccaaaagtaggacatttctcgaattataacacatatgggt 100  Q
    ||||||||| ||||||| |||||||||||| ||||||||| ||||||||| || ||||||| |||||||||||||||||||||| ||||||||||||||     
T  16715133 tcctaaaacaattcaacttttggaatgctacgaaaacatctacaagagaagtgaagtgacctaaaagtaggacatttctcgaatcataacacatatgggc 16715232  T
Q  101 tcagcccctaccagctcatgggttcttaaagtacttcacattttcaggcttgatgattggggcgttcttgaatagactaggggatcgacccatatcctag 200  Q
    || | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| ||||||||||||||||| |    
T  16715233 tcggtccctaccagctcatgggttcttaaagtacttcacattttcaggcttgatgcttggggcgttcttaaatagattagtggatcgacccatatccttg 16715332  T
Q  201 ctactcttaaaggataaaaggctactcaaatgtctttaaaattaaaagcgaacaaaacaatcaaaatattattatttattgtcttatttcatttcattac 300  Q
     ||||||||| ||||||||||||||  |||| ||| |||||||||||  ||||||||   | ||||||||||||||||||| ||||||||||||||||||    
T  16715333 ttactcttaagggataaaaggctacaaaaatatctataaaattaaaatagaacaaaaattttaaaatattattatttattgccttatttcatttcattac 16715432  T
Q  301 catcatcttagattaaaattccataaatacatggttcttgaaattagnnnnnnnnnnnnnttaaactattggagtgccaacacaataacaaaataacatc 400  Q
    |||||||||| | || || |||||||||||| ||||||| | |||||             | ||||||||||||| |||| ||||||||||||| |||||    
T  16715433 catcatcttataatacaaatccataaatacaaggttcttcacattag-gaaaaaaaaaattcaaactattggagtaccaagacaataacaaaatgacatc 16715531  T
Q  401 tcatggaaaattcaagaaggaatataatttgtgtatgctcttaggtatggcaaacatac 459  Q
    |||||||| |||||||||||||||||||||||||| ||||||  |||||| ||||||||    
T  16715532 tcatggaatattcaagaaggaatataatttgtgtacgctctttagtatggaaaacatac 16715590  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 282 - 347
Target Start/End: Complemental strand, 6113468 - 6113403
Alignment:
Q  282 tcttatttcatttcattaccatcatcttagattaaaattccataaatacatggttcttgaaattag 347  Q
    |||||||| |||||||||||||||||||||| || ||  |||| | |||| |||||||||||||||    
T  6113468 tcttatttgatttcattaccatcatcttagagtacaaagccattactacaaggttcttgaaattag 6113403  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 282 - 347
Target Start/End: Complemental strand, 6120360 - 6120295
Alignment:
Q  282 tcttatttcatttcattaccatcatcttagattaaaattccataaatacatggttcttgaaattag 347  Q
    |||||||| |||||||||||||||||||||| || ||  |||| | |||| |||||||||||||||    
T  6120360 tcttatttgatttcattaccatcatcttagagtacaaagccattactacaaggttcttgaaattag 6120295  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 347
Target Start/End: Original strand, 6091276 - 6091353
Alignment:
Q  270 tattatttattgtcttatttcatttcattaccatcatcttagattaaaattccataaatacatggttcttgaaattag 347  Q
    ||||||||| | |||||||  |||||||||||||||||||||| |  ||  |||| | |||| |||||||||||||||    
T  6091276 tattatttactatcttattcgatttcattaccatcatcttagagtccaaagccattactacaaggttcttgaaattag 6091353  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 346
Target Start/End: Complemental strand, 31290629 - 31290540
Alignment:
Q  257 acaatcaaaatattattatttattgtcttatttcatttcattaccatcatcttagattaaaattccataaatacatggttcttgaaatta 346  Q
    |||||| |||||| |||||||  || ||||||||||||||||||||| || ||||| || ||  |||||| ||||  ||| |||||||||    
T  31290629 acaatctaaatataattattttctgccttatttcatttcattaccattatattagagtataaaaccataactacaatgtttttgaaatta 31290540  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 346
Target Start/End: Complemental strand, 6069121 - 6069057
Alignment:
Q  282 tcttatttcatttcattaccatcatcttagattaaaattccataaatacatggttcttgaaatta 346  Q
    |||||||||||||||||| |||||||||||| || ||   ||| | |||| ||||||||||||||    
T  6069121 tcttatttcatttcattaacatcatcttagagtacaaaggcattactacaaggttcttgaaatta 6069057  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 315
Target Start/End: Complemental strand, 10658339 - 10658307
Alignment:
Q  283 cttatttcatttcattaccatcatcttagatta 315  Q
    ||||||||||||| |||||||||||||||||||    
T  10658339 cttatttcatttctttaccatcatcttagatta 10658307  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 304
Target Start/End: Original strand, 32607656 - 32607701
Alignment:
Q  259 aatcaaaatattattatttattgtcttatttcatttcattaccatc 304  Q
    |||| ||||| |||||||| ||||| ||||||||||||||||||||    
T  32607656 aatctaaataatattatttgttgtcatatttcatttcattaccatc 32607701  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 103087 - 103135
Alignment:
Q  264 aaatattattatttattgtcttatttcatttcattaccatcatcttaga 312  Q
    ||||| ||||||||  | ||||||||||||| |||||||||||||||||    
T  103087 aaataatattattttatttcttatttcatttgattaccatcatcttaga 103135  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 309
Target Start/End: Complemental strand, 3067794 - 3067742
Alignment:
Q  257 acaatcaaaatattattatttattgtcttatttcatttcattaccatcatctt 309  Q
    |||||| ||||||||||||||  |||||||||||||||  |||| ||||||||    
T  3067794 acaatctaaatattattatttgctgtcttatttcattttcttacaatcatctt 3067742  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 312
Target Start/End: Complemental strand, 26316123 - 26316091
Alignment:
Q  280 tgtcttatttcatttcattaccatcatcttaga 312  Q
    ||||||||||||||||||||||| |||||||||    
T  26316123 tgtcttatttcatttcattaccaacatcttaga 26316091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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