View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9772_low_75 (Length: 231)

Name: NF9772_low_75
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9772_low_75
NF9772_low_75
[»] chr1 (5 HSPs)
chr1 (1-190)||(45795453-45795642)
chr1 (1-190)||(13867537-13867726)
chr1 (83-185)||(34352752-34352854)
chr1 (17-61)||(34352668-34352712)
chr1 (146-185)||(5808973-5809012)
[»] chr4 (2 HSPs)
chr4 (1-190)||(43516452-43516641)
chr4 (17-55)||(54483016-54483054)
[»] chr3 (3 HSPs)
chr3 (1-190)||(40513428-40513617)
chr3 (17-66)||(18368801-18368850)
chr3 (109-185)||(34829774-34829850)
[»] chr6 (3 HSPs)
chr6 (82-190)||(14686712-14686820)
chr6 (15-66)||(23065893-23065944)
chr6 (15-66)||(9565610-9565661)
[»] chr2 (4 HSPs)
chr2 (83-178)||(11196680-11196775)
chr2 (1-87)||(11196580-11196666)
chr2 (17-66)||(35488082-35488131)
chr2 (17-66)||(8066072-8066121)
[»] chr7 (1 HSPs)
chr7 (1-50)||(26855942-26855991)


Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 45795453 - 45795642
Alignment:
Q  1 ccattaattaaaagcttacactcctctagcaaatcctcctcccacacccttaacctacgccgccaattcgacgcctctccatcaaccatatcagctaccg 100  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  45795453 ccattaattaaaagcctacactcctctagcatatcctcctcccacacccttaacctacgccgccaattccacgcctctccatcaaccatatcagctaccg 45795552  T
Q  101 tgctcaacttattagacactaaattaaatagacgacggaacctgatacaaaaaggaacatcactcagccacctgtcataccaaaactaag 190  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||| ||||    
T  45795553 tgctcaacttattagacactaaattaaatagacgacggaaactgatacaaaaaggaacatcacctagccacctgtcataccaaaagtaag 45795642  T

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Target: chr1; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 13867726 - 13867537
Alignment:
Q  1 ccattaattaaaagcttacactcctctagcaaatcctcctcccacacccttaacctacgccgccaattcgacgcctctccatcaaccatatcagctaccg 100  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  13867726 ccattaattaaaagcctacactcctctagcatatcctcctcccacacccttaacctacgccgccaattccacgcctctccaacaaccatatcagctaccg 13867627  T
Q  101 tgctcaacttattagacactaaattaaatagacgacggaacctgatacaaaaaggaacatcactcagccacctgtcataccaaaactaag 190  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||    
T  13867626 tgctcaacttattagacactaaattaaaaagacgacggaacctgatacaaaaaggaacatcaccaagccacctgtcataccaaaagtaag 13867537  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 83 - 185
Target Start/End: Original strand, 34352752 - 34352854
Alignment:
Q  83 caaccatatcagctaccgtgctcaacttattagacactaaattaaatagacgacggaacctgatacaaaaaggaacatcactcagccacctgtcatacca 182  Q
    ||||||||| |||||| ||||||| |||||||||| |||| | |||||| ||||| |||||||||||||||||||||||||  |||||||||||||| ||    
T  34352752 caaccatattagctactgtgctcagcttattagacgctaagtcaaataggcgacgcaacctgatacaaaaaggaacatcaccaagccacctgtcatatca 34352851  T
Q  183 aaa 185  Q
    |||    
T  34352852 aaa 34352854  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 34352668 - 34352712
Alignment:
Q  17 tacactcctctagcaaatcctcctcccacacccttaacctacgcc 61  Q
    |||||||||||||||  ||||||||||||||||| ||||||||||    
T  34352668 tacactcctctagcatctcctcctcccacaccctcaacctacgcc 34352712  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 5808973 - 5809012
Alignment:
Q  146 tacaaaaaggaacatcactcagccacctgtcataccaaaa 185  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  5808973 tacaaaaaggaacatcaccaagccacctgtcataccaaaa 5809012  T

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Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 43516641 - 43516452
Alignment:
Q  1 ccattaattaaaagcttacactcctctagcaaatcctcctcccacacccttaacctacgccgccaattcgacgcctctccatcaaccatatcagctaccg 100  Q
    |||||||||||| || ||||||||||||||| |||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||    
T  43516641 ccattaattaaatgcctacactcctctagcatatcctcctcccacaccctcaacctacgccgccaactccacgcctctccatcaaccatatcagctaccg 43516542  T
Q  101 tgctcaacttattagacactaaattaaatagacgacggaacctgatacaaaaaggaacatcactcagccacctgtcataccaaaactaag 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||| ||||    
T  43516541 tgctcaacttattagacactaaattaaatagacgacggaacctgatacaaaaaggaacatcaccaagccacttgtcataccaaaagtaag 43516452  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 54483054 - 54483016
Alignment:
Q  17 tacactcctctagcaaatcctcctcccacacccttaacc 55  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  54483054 tacactcctctaccaaatcctcctcccacacccataacc 54483016  T

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Target: chr3 (Bit Score: 134; Significance: 7e-70; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 40513617 - 40513428
Alignment:
Q  1 ccattaattaaaagcttacactcctctagcaaatcctcctcccacacccttaacctacgccgccaattcgacgcctctccatcaaccatatcagctaccg 100  Q
    ||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||| ||    
T  40513617 ccattaattaacagcctacactcctctagcatatcctcctcccacacccttaacctacgccgccaattccacccctctccagcaaccatatcagctatcg 40513518  T
Q  101 tgctcaacttattagacactaaattaaatagacgacggaacctgatacaaaaaggaacatcactcagccacctgtcataccaaaactaag 190  Q
    |||||||||||| ||||||||||||||| || ||||||||||||||||| ||||||||||||| |||||| |||||||||||||| ||||    
T  40513517 tgctcaacttatcagacactaaattaaaaagtcgacggaacctgatacagaaaggaacatcacccagccatctgtcataccaaaagtaag 40513428  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 18368850 - 18368801
Alignment:
Q  17 tacactcctctagcaaatcctcctcccacacccttaacctacgccgccaa 66  Q
    ||||||||||||||||| |||||||||||||||  |||||||||||||||    
T  18368850 tacactcctctagcaaagcctcctcccacacccacaacctacgccgccaa 18368801  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 34829774 - 34829850
Alignment:
Q  109 ttattagacactaaattaaatagacgacggaacctgatacaaaaaggaacatcactcagccacctgtcataccaaaa 185  Q
    ||||||||||||| || |||||  ||||| |||||  |||||||||| |||||||  ||||||||||||||||||||    
T  34829774 ttattagacactagatcaaataaccgacgaaacctagtacaaaaagggacatcaccaagccacctgtcataccaaaa 34829850  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 190
Target Start/End: Complemental strand, 14686820 - 14686712
Alignment:
Q  82 tcaaccatatcagctaccgtgctcaacttattagacactaaattaaatagacgacggaacctgatacaaaaaggaacatcactcagccacctgtcatacc 181  Q
    |||||||||||||| || |||||||| ||||||||  |||||| ||| | ||||||||| ||  ||||||||||   |||||  ||||||||||||||||    
T  14686820 tcaaccatatcagccacagtgctcaatttattagatgctaaatcaaacaaacgacggaatctagtacaaaaaggtgtatcaccaagccacctgtcatacc 14686721  T
Q  182 aaaactaag 190  Q
    |||| ||||    
T  14686720 aaaagtaag 14686712  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 23065944 - 23065893
Alignment:
Q  15 cttacactcctctagcaaatcctcctcccacacccttaacctacgccgccaa 66  Q
    ||||||||||||||||||||||||||||||| |||  |||| ||||||||||    
T  23065944 cttacactcctctagcaaatcctcctcccacgcccacaaccgacgccgccaa 23065893  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 9565610 - 9565661
Alignment:
Q  15 cttacactcctctagcaaatcctcctcccacacccttaacctacgccgccaa 66  Q
    ||||||||||||||||||| ||||||||||| |||  |||||||||| ||||    
T  9565610 cttacactcctctagcaaagcctcctcccacgcccacaacctacgcctccaa 9565661  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 178
Target Start/End: Original strand, 11196680 - 11196775
Alignment:
Q  83 caaccatatcagctaccgtgctcaacttattagacactaaattaaatagacgacggaacctgatacaaaaaggaacatcactcagccacctgtcat 178  Q
    ||||||||||||| ||||| ||||  ||||||||| |||| | ||||| || |||||||||| |||||||||||  |||||  |||||||| ||||    
T  11196680 caaccatatcagccaccgtactcagtttattagacgctaagtcaaataaacaacggaacctggtacaaaaaggagtatcaccaagccacctatcat 11196775  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 11196580 - 11196666
Alignment:
Q  1 ccattaattaaaagcttacactcctctagcaaatcctcctcccacacccttaacctacgccgccaattcgacgcctctccatcaacc 87  Q
    |||||||||||  || |||||||||||||||  ||||||||||||||||| ||| | |||| ||||  | |||||||||| ||||||    
T  11196580 ccattaattaattgcctacactcctctagcatctcctcctcccacaccctcaacattcgcctccaaccccacgcctctccgtcaacc 11196666  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 35488082 - 35488131
Alignment:
Q  17 tacactcctctagcaaatcctcctcccacacccttaacctacgccgccaa 66  Q
    ||||||||||||||||| ||||||||||| |||  |||||||||||||||    
T  35488082 tacactcctctagcaaagcctcctcccacgcccacaacctacgccgccaa 35488131  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 8066121 - 8066072
Alignment:
Q  17 tacactcctctagcaaatcctcctcccacacccttaacctacgccgccaa 66  Q
    ||||||||||||||| | ||||||||||| |||  |||||||||||||||    
T  8066121 tacactcctctagcatagcctcctcccacgcccacaacctacgccgccaa 8066072  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 26855942 - 26855991
Alignment:
Q  1 ccattaattaaaagcttacactcctctagcaaatcctcctcccacaccct 50  Q
    ||||||||||||||| |||||||||||| ||  |||||||||||| ||||    
T  26855942 ccattaattaaaagcctacactcctctaacagctcctcctcccacgccct 26855991  T

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