View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9772_low_76 (Length: 230)
Name: NF9772_low_76
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9772_low_76 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 54100111 - 54099882
Alignment:
| Q |
1 |
ggaaggttaggatccaatttcaaatttaaatcaaggatatcacatatgctttctcaacgcaggttcaaccctagtactgaaggttggaagggtgtggatt |
100 |
Q |
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| T |
54100111 |
ggaagggtaggatccaattccaaattcaaatcaaggatatcacgtatgctttctcaacgcaggttcaaccctagtactgaaggttggaagggtgtgggtt |
54100012 |
T |
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| Q |
101 |
caaaccaacatattagacttaaatgagggtgaaacttttctttaaccgatgacagtaagttcagtcatattttaaacattttatagtcgaatagagtttt |
200 |
Q |
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| T |
54100011 |
caaaccaacatattagacataaatgagggtgaaacttttctttaaccgatggcagtaagttcagtcatattttaaacattttatagtcgaatagagtttt |
54099912 |
T |
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| Q |
201 |
gcggttttgtatcctgttctactcaaatga |
230 |
Q |
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| T |
54099911 |
gcggttttgtatcctgttctactcaaatga |
54099882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 54100959 - 54100833
Alignment:
| Q |
8 |
taggatccaatttcaaatttaaatcaaggatatcacatatgctttctcaacgcaggttcaaccctagtact-gaaggttggaagggtgtggattcaaacc |
106 |
Q |
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|||||||||||| |||||| ||| |||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
54100959 |
taggatccaattccaaattcaaaccaaggatatcacgtatgctttctcaacgcatgttcaaccctagtactagaaggttggaagggtgtgggttcaaacc |
54100860 |
T |
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| Q |
107 |
aacatattagacttaaatgagggtgaa |
133 |
Q |
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| T |
54100859 |
aacatgttagacataaatgagggtgaa |
54100833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 54100536 - 54100410
Alignment:
| Q |
8 |
taggatccaatttcaaatttaaatcaaggatatcacatatgctttctcaacgcaggttcaaccctagtact-gaaggttggaagggtgtggattcaaacc |
106 |
Q |
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|||||||||||| |||||| ||| ||||||||||| ||||||||||||||||| |||||||| ||||||| ||||||||||||||||||| |||||||| |
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| T |
54100536 |
taggatccaattccaaattcaaaccaaggatatcatgtatgctttctcaacgcatgttcaaccatagtactagaaggttggaagggtgtgggttcaaacc |
54100437 |
T |
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| Q |
107 |
aacatattagacttaaatgagggtgaa |
133 |
Q |
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| T |
54100436 |
aacatgttagacataaatgagggtgaa |
54100410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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