View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9772_low_77 (Length: 229)
Name: NF9772_low_77
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9772_low_77 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 51531998 - 51531776
Alignment:
| Q |
1 |
atccctttcttggctagaatttcgcaattctggaacataactgtgccatttccaaaaatgaaatccaccgtaccagtgattttacacgctttgtagaatt |
100 |
Q |
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| T |
51531998 |
atccctttcttggctagaatttcgcaattctggaacataactgtgccatttccaaaaatgaaatccaccgtaccagtgattttacacgctttgtagaatt |
51531899 |
T |
|
| Q |
101 |
ggcgctgtgtatgggtatataggctatcttgataaccgaatatcccacaccgataaaatacggagaggtcagagtccgatcttaaagccactgcttgttc |
200 |
Q |
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| T |
51531898 |
ggcgctgtgtatgggtatataggctatcttgataaccgaatatcccacaccgataaaatacagagaggtcagagtccgatcttaaagccactgcttgttc |
51531799 |
T |
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| Q |
201 |
cttctcgggacctgcggtgtttt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
51531798 |
cttctcgggacctgcggtgtttt |
51531776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 51526251 - 51526031
Alignment:
| Q |
1 |
atccctttcttggctagaatttcgcaattctggaacataactgtgccatttccaaaaatgaaatccaccgtaccagtgattttacacgctttgtagaatt |
100 |
Q |
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| T |
51526251 |
atccctttcttggctagtatttgacagttttggaacacagccgtggcgtctccaaagatgaaatccacagtaccactaattttgcattcacggtagaact |
51526152 |
T |
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| Q |
101 |
ggcgctgtgtatgggtatataggctatcttgataaccgaatatcccacaccgataaaatacggagaggtcagagtccgatcttaaagccactgcttgttc |
200 |
Q |
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| T |
51526151 |
gacgcatggtgtgagtatataggctatcttgataaccgaatatcccacaccgataaaatactgagaggtcagagtctgatcttaacgccactgcttggtg |
51526052 |
T |
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| Q |
201 |
cttctcgggacctgcggtgtt |
221 |
Q |
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| T |
51526051 |
cttctcggcacctgcggtgtt |
51526031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 95 - 221
Target Start/End: Original strand, 19509856 - 19509982
Alignment:
| Q |
95 |
agaattggcgctgtgtatgggtatataggctatcttgataaccgaatatcccacaccgataaaatacggagaggtcagagtccgatcttaaagccactgc |
194 |
Q |
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| T |
19509856 |
agaattggcgcattgtatgcgtgtagaggctgtcttggtaaccaaaaatcccacatcgatagaatacagagaggtcagagtcggatcttagtgccactgc |
19509955 |
T |
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| Q |
195 |
ttgttccttctcgggacctgcggtgtt |
221 |
Q |
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||| | |||||| |||||||| ||||| |
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| T |
19509956 |
ttggtgcttctcaggacctgcagtgtt |
19509982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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