View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9772_low_8 (Length: 462)

Name: NF9772_low_8
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9772_low_8
NF9772_low_8
[»] chr8 (5 HSPs)
chr8 (17-452)||(23576145-23576582)
chr8 (17-429)||(23595738-23596148)
chr8 (17-429)||(23604660-23605070)
chr8 (157-452)||(23590454-23590747)
chr8 (242-301)||(23564476-23564535)
[»] chr2 (3 HSPs)
chr2 (186-432)||(34339519-34339765)
chr2 (196-337)||(2649383-2649524)
chr2 (245-357)||(2645619-2645731)
[»] chr4 (2 HSPs)
chr4 (196-336)||(36461709-36461849)
chr4 (274-335)||(36455339-36455400)


Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 17 - 452
Target Start/End: Complemental strand, 23576582 - 23576145
Alignment:
Q  17 atttagtatattttttagttgatagtgaaatcaccaaaatcacaatgacaccgtacttttattaagttttaaagtgta--gtttttaacaaaaactacac 114  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||   || |||||| ||| | |||||||||  | |||||||||||| ||||     
T  23576582 atttagtatattttttggttgatagtgaaatcgccaaaatcacaatgacattataattttataaagctctaaagtgtatagcttttaacaaaaattacag 23576483  T
Q  115 tggttagccgtgattctgtaattctcacaaacactacaaacaatgcactaggagaatatgatcgagtaaaggctcttacgctgtagtctcttggccaccg 214  Q
    |||||||||| |||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23576482 tggttagccgcgattctgtaattctcataaacattccaaacaatgcactaggagaatatgatcgagtaaaggctcttacgctgtagtctcttggccaccg 23576383  T
Q  215 ccttgggaactggtgctgtagaagattccggcaggcttccctgcaagctgttgtgttttccatagaccaccagttgcatctagaaaggctttaaactgag 314  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23576382 ccttgggaactggtgctgtagaagattccagcaggcttaccggcaagctgttgtgttttccatagtccaccagttgcatctagaaaggctttaaactgag 23576283  T
Q  315 cagccatcattccaaatcttgttggaaatccaaagacaaaaccgtcaccctcagagagttcattcggggtaatgatcggtacatcactcttgggtggtgc 414  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| || |  |||||||||||||||||||| |||||||||||||||||||||||    
T  23576282 cagccatcattccaaatcttgttggaaatccaaagacaaaaccatcaccttcggttagttcattcggggtaatgattggtacatcactcttgggtggtgc 23576183  T
Q  415 tctcatcttaccaagcacttcttccgccaatatctctg 452  Q
    ||||||||||||||| || ||||| | |||||| ||||    
T  23576182 tctcatcttaccaagtacctcttctggcaatatttctg 23576145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 17 - 429
Target Start/End: Complemental strand, 23596148 - 23595738
Alignment:
Q  17 atttagtatattttttagttgatagtgaaatcaccaaaatcacaatgacaccgtacttttattaagttttaaagtgtagtttttaacaaaaactacactg 116  Q
    |||||| ||||||||| |||||||| |||||| |||||||||||||||||| ||| |||||| ||| | || ||||||| ||||||||||||  |||||     
T  23596148 atttagcatattttttggttgatagggaaatcgccaaaatcacaatgacactgtaattttataaagctctagagtgtagcttttaacaaaaataacactt 23596049  T
Q  117 gttagccgtgattctgtaattctcacaaacactacaaacaatgcactaggagaatatgatcgagtaaaggctcttacgctgtagtctcttggccaccgcc 216  Q
    ||| ||| ||||| || ||||||||| |||| | |||  |||| ||||  ||||||||||| | ||||||||||| || |||||||||||||||| ||||    
T  23596048 gttcgccatgattttgcaattctcaccaacagtccaataaatgtacta--agaatatgatccactaaaggctcttccgttgtagtctcttggccatcgcc 23595951  T
Q  217 ttgggaactggtgctgtagaagattccggcaggcttccctgcaagctgttgtgttttccatagaccaccagttgcatctagaaaggctttaaactgagca 316  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||| |||||||||||||| ||||    
T  23595950 ttgggaactgatgctgtagaagattccggcaggcttccctgcaagctgttgcgttttccagagaccaccaattgcatctataaaggctttaaactaagca 23595851  T
Q  317 gccatcattccaaatcttgttggaaatccaaagacaaaaccgtcaccctcagagagttcattcggggtaatgatcggtacatcactcttgggtggtgctc 416  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||| ||||  |||||||||||||||||||| |||||||||||||||||||||||||    
T  23595850 gccatcattccaaatcttgttggaaatccaaagaaaaaaccatcaccttcagttagttcattcggggtaatgattggtacatcactcttgggtggtgctc 23595751  T
Q  417 tcatcttaccaag 429  Q
    |||||||||||||    
T  23595750 tcatcttaccaag 23595738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 17 - 429
Target Start/End: Complemental strand, 23605070 - 23604660
Alignment:
Q  17 atttagtatattttttagttgatagtgaaatcaccaaaatcacaatgacaccgtacttttattaagttttaaagtgtagtttttaacaaaaactacactg 116  Q
    |||||| ||||||||| |||||||| |||||| |||||||||||||||||| ||| |||||| ||| | || ||||||| ||||||||||||  |||||     
T  23605070 atttagcatattttttggttgatagggaaatcgccaaaatcacaatgacactgtaattttataaagctctagagtgtagcttttaacaaaaataacactt 23604971  T
Q  117 gttagccgtgattctgtaattctcacaaacactacaaacaatgcactaggagaatatgatcgagtaaaggctcttacgctgtagtctcttggccaccgcc 216  Q
    ||| ||| ||||| || ||||||||| |||| | |||  |||| ||||  ||||||||||| | ||||||||||| || |||||||||||||||| ||||    
T  23604970 gttcgccatgattttgcaattctcaccaacagtccaataaatgtacta--agaatatgatccactaaaggctcttccgttgtagtctcttggccatcgcc 23604873  T
Q  217 ttgggaactggtgctgtagaagattccggcaggcttccctgcaagctgttgtgttttccatagaccaccagttgcatctagaaaggctttaaactgagca 316  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||| |||||||||||||| ||||    
T  23604872 ttgggaactgatgctgtagaagattccggcaggcttccctgcaagctgttgcgttttccagagaccaccaattgcatctataaaggctttaaactaagca 23604773  T
Q  317 gccatcattccaaatcttgttggaaatccaaagacaaaaccgtcaccctcagagagttcattcggggtaatgatcggtacatcactcttgggtggtgctc 416  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||| ||||  |||||||||||||||||||| |||||||||||||||||||||||||    
T  23604772 gccatcattccaaatcttgttggaaatccaaagaaaaaaccatcaccttcagttagttcattcggggtaatgattggtacatcactcttgggtggtgctc 23604673  T
Q  417 tcatcttaccaag 429  Q
    |||||||||||||    
T  23604672 tcatcttaccaag 23604660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 157 - 452
Target Start/End: Complemental strand, 23590747 - 23590454
Alignment:
Q  157 atgcactaggagaatatgatcgagtaaaggctcttacgctgtagtctcttggccaccgccttgggaactggtgctgtagaagattccggcaggcttccct 256  Q
    |||||||| || |||| | |||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||| |||||||||||||    
T  23590747 atgcactaagataataggttcgagtaaaggctcttacgctgtagtctcttgtccaccgccttgggaactagtgttgtagaagattctggcaggcttccct 23590648  T
Q  257 gcaagctgttgtgttttccatagaccaccagttgcatctagaaaggctttaaactgagcagccatcattccaaatcttgttggaaatccaaagacaaaac 356  Q
     ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23590647 acaagctgttgtgttttccaaagaccaccagttgcatctagaaaggctttaaattgagcagccatcattccaaatcttgttggaaatccaaagacaaaac 23590548  T
Q  357 cgtcaccctcagagagttcattcggggtaatgatcggtacatcactcttgggtggtgctctcatcttaccaagcacttcttccgccaatatctctg 452  Q
    | ||||||||||| || ||||| |||||| | || |||||||||  ||||||||||||||||||||| ||||| ||||| || |||||||| ||||    
T  23590547 catcaccctcagaaagctcattgggggtagtaattggtacatca--cttgggtggtgctctcatctttccaagtacttcgtctgccaatatttctg 23590454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 301
Target Start/End: Original strand, 23564476 - 23564535
Alignment:
Q  242 ccggcaggcttccctgcaagctgttgtgttttccatagaccaccagttgcatctagaaag 301  Q
    ||||||||||||||||||||||||  |||||||||||||||  ||||| | |||||||||    
T  23564476 ccggcaggcttccctgcaagctgtcctgttttccatagacctacagtttcttctagaaag 23564535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 135; Significance: 4e-70; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 186 - 432
Target Start/End: Complemental strand, 34339765 - 34339519
Alignment:
Q  186 gctcttacgctgtagtctcttggccaccgccttgggaactggtgctgtagaagattccggcaggcttccctgcaagctgttgtgttttccatagaccacc 285  Q
    |||||||||||||||||||||| || || ||||| ||||  |||||||||||||||||||||||||| |||||||||  ||||| |||||| | ||||||    
T  34339765 gctcttacgctgtagtctcttgtcctccaccttgagaaccagtgctgtagaagattccggcaggcttgcctgcaagcgattgtgctttccacaaaccacc 34339666  T
Q  286 agttgcatctagaaaggctttaaactgagcagccatcattccaaatcttgttggaaatccaaagacaaaaccgtcaccctcagagagttcattcggggta 385  Q
    ||| ||||| ||||| ||||| || ||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| |||||||| || ||     
T  34339665 agtagcatcaagaaaagctttgaattgagcagccatcattccaaatcttgttgggaagccaaagacaaaaccatcaccctcagacagttcatttggtgtg 34339566  T
Q  386 atgatcggtacatcactcttgggtggtgctctcatcttaccaagcac 432  Q
    ||||  ||||||||||||||||||||||| |||||||| ||||||||    
T  34339565 atgagtggtacatcactcttgggtggtgcactcatctttccaagcac 34339519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 196 - 337
Target Start/End: Original strand, 2649383 - 2649524
Alignment:
Q  196 tgtagtctcttggccaccgccttgggaactggtgctgtagaagattccggcaggcttccctgcaagctgttgtgttttccatagaccaccagttgcatct 295  Q
    |||||| ||||||||||| |||||  ||   |||||||| ||||| || |||||||| |||||||| |  |||||   ||||||  | ||||||| |||     
T  2649383 tgtagtttcttggccacctccttgacaagcagtgctgtaaaagatgccagcaggctttcctgcaagtttctgtgtgcaccataggtctccagttgtatcc 2649482  T
Q  296 agaaaggctttaaactgagcagccatcattccaaatcttgtt 337  Q
    | ||| ||||| || |||| ||||||||||||||||||||||    
T  2649483 ataaatgctttgaattgagtagccatcattccaaatcttgtt 2649524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 357
Target Start/End: Original strand, 2645619 - 2645731
Alignment:
Q  245 gcaggcttccctgcaagctgttgtgttttccatagaccaccagttgcatctagaaaggctttaaactgagcagccatcattccaaatcttgttggaaatc 344  Q
    |||||||| ||||||||   |||| | ||||||| ||  ||||||||||| | |||  |||| || ||||||| |||||||||| |||||| |||||| |    
T  2645619 gcaggctttcctgcaagtgtttgtttgttccataaacttccagttgcatcaaaaaatactttgaattgagcagacatcattccatatcttgctggaaaac 2645718  T
Q  345 caaagacaaaacc 357  Q
    |||| | ||||||    
T  2645719 caaacaaaaaacc 2645731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 196 - 336
Target Start/End: Complemental strand, 36461849 - 36461709
Alignment:
Q  196 tgtagtctcttggccaccgccttgggaactggtgctgtagaagattccggcaggcttccctgcaagctgttgtgttttccatagaccaccagttgcatct 295  Q
    |||||||||||| || || || || ||||  |||||||| |||||||| |||||||| ||||||||    || ||   |||||| ||||||||||||||     
T  36461849 tgtagtctcttgtcctcctccctgagaaccagtgctgtaaaagattcctgcaggctttcctgcaagtgcctgagtacgccataggccaccagttgcatcc 36461750  T
Q  296 agaaaggctttaaactgagcagccatcattccaaatcttgt 336  Q
    |  || |||||||||||||||||||||||||||||||||||    
T  36461749 aagaatgctttaaactgagcagccatcattccaaatcttgt 36461709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 335
Target Start/End: Complemental strand, 36455400 - 36455339
Alignment:
Q  274 ccatagaccaccagttgcatctagaaaggctttaaactgagcagccatcattccaaatcttg 335  Q
    |||||| |||||||||||||| |  || ||||||||||||||||||||||||||||||||||    
T  36455400 ccataggccaccagttgcatccaagaatgctttaaactgagcagccatcattccaaatcttg 36455339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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