View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9772_low_82 (Length: 203)
Name: NF9772_low_82
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9772_low_82 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 45367146 - 45367334
Alignment:
| Q |
1 |
aagtgaaaaagagttgaacctttgatttaaacataacaaggccttcttgacagtaagcacnnnnnnn--ttatactttcgaagcaattctagagtgaacc |
98 |
Q |
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| T |
45367146 |
aagtgaaaaagagttgaacctttgatttaaacataacaaggccttcttgacagtaagcacaaaaaaaaattatactttcgaagcaattctagagtgaacc |
45367245 |
T |
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| Q |
99 |
catttatgttgatgagcttcataggttttggtttgaatgaatctgtaaagaaaccaagcaagaagtgttaaacaaaatagggagagaaa |
187 |
Q |
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| T |
45367246 |
catttatgttgatgagcttcataggttttggtttgaatgaatctgtaaagaaaccaagcaagaagtgttaaacaaaatagggagagaaa |
45367334 |
T |
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Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 91 - 187
Target Start/End: Original strand, 432132 - 432228
Alignment:
| Q |
91 |
agtgaacccatttatgttgatgagcttcataggttttggtttgaatgaatctgtaaagaaaccaagcaagaagtgttaaacaaaatagggagagaaa |
187 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
432132 |
agtggacccatttatgttgatgagcttcatagcttttggtttgaatgaatctgtaaagaaaccaagcaagaagtgctaaacaaaatagggagagaaa |
432228 |
T |
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