View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9772_low_9 (Length: 459)
Name: NF9772_low_9
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9772_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 16 - 443
Target Start/End: Complemental strand, 31078929 - 31078487
Alignment:
| Q |
16 |
acatcacgatgaatattatgattttggcaaatttggtgtgataccaa--acatattctatacaagataatgagtatgttttgacgttggaacttttggaa |
113 |
Q |
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| T |
31078929 |
acatcacgatgaatattatgattttggcaaatttggtgtgataccaattacatattctatacaagataatgagtatgttttgacgttggaacctttggaa |
31078830 |
T |
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| Q |
114 |
catatttatgcaacatttacttttatgagaaatgctaagaaa-------------cattgtaatgtaaaatgtggaaaagttgtatatgtaattttttaa |
200 |
Q |
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| T |
31078829 |
catatttatgcaacatttacttttatgagaaatgctaagaaaactaatatagaaacattgtaatgtaaaatgtggaaaagttgtatatttaactttttaa |
31078730 |
T |
|
| Q |
201 |
aatcaagaatgtgtggttttcaatgaaattttttcacttttaactttcttaactaatatctcagggatactagttaacatgaccttattaatttttattg |
300 |
Q |
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| T |
31078729 |
aattaagaatatgtggtttttaatgaaattttttcacttttaactttcttaactaatatatcagcaatactagttaacatgaccttattaatttttattg |
31078630 |
T |
|
| Q |
301 |
atctttgtggcttcgcttctcaattcttaccaagaagccacccttcatcaatgaggtaaggtgtgcaatgtactccggctcaacccctttatccatcgca |
400 |
Q |
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| T |
31078629 |
atctttgtggcttcgcttctcaattcttaccgagaagccacctttcatcaatgaggtaaggtgtgcaatgtactccggctcaacccctttatccattgca |
31078530 |
T |
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| Q |
401 |
ggaaccaccctaaactgcctcatgatccctgcaaccaccctct |
443 |
Q |
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| T |
31078529 |
ggaaccaccctaaactgcctcatgatccctgcaaccaccctct |
31078487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 314 - 441
Target Start/End: Complemental strand, 31127934 - 31127807
Alignment:
| Q |
314 |
cgcttctcaattcttaccaagaagccacccttcatcaatgaggtaaggtgtgcaatgtactccggctcaacccctttatccatcgcaggaaccaccctaa |
413 |
Q |
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||||||||||| |||||| ||||||||| ||||| | || |||||||||||| | ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31127934 |
cgcttctcaatctttaccaggaagccacctttcattatcgaagtaaggtgtgcagcgaactccggctcaacccctttatccattgcaggaaccaccctaa |
31127835 |
T |
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| Q |
414 |
actgcctcatgatccctgcaaccaccct |
441 |
Q |
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| T |
31127834 |
actgcctcatgatcccggcaaccaccct |
31127807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 24123320 - 24123380
Alignment:
| Q |
193 |
ttttttaaaatcaagaatgtgtggttttcaatgaaattttttcacttttaactttcttaac |
253 |
Q |
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| T |
24123320 |
ttttttaaaatcaagaatttgttgttttcaattaaaattttctacttttaacttttttaac |
24123380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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