View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9773_high_13 (Length: 247)
Name: NF9773_high_13
Description: NF9773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9773_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 5501895 - 5502136
Alignment:
| Q |
1 |
ttttggatgggtatacagagcttaagcatcattgatctatccaacaacatgttggaaggtggaattccaacttcaatatgctcattacctttactcttta |
100 |
Q |
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| T |
5501895 |
ttttggatgggtatacagagcttaagcatcattgatctatccaacaacatgttggaaggtggaattccaacttcaatatgctcattacctttacttttta |
5501994 |
T |
|
| Q |
101 |
tcctagaattgagcaacaacaatctcactgcagatttgtcttcaacctttcgaaactgtactcagctgaaaacactctcgctaaaatacaacaggttttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
5501995 |
tcctagaattgagcaacaacaatctcactgcagatttgtcttcaacctttcaaaactgtactcagctaaagacactctcgctaaaatacaacaggttttt |
5502094 |
T |
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| Q |
201 |
tgggtctatgccaaacgagatagccaacaacattcctatgct |
242 |
Q |
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| T |
5502095 |
tgggtctatgccaaacgagatagccaacaacattcctatgct |
5502136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5496866 - 5497086
Alignment:
| Q |
1 |
ttttggatgggtatacagagcttaagcatcattgatctatccaacaacatgttggaaggtggaattccaacttcaatatgctcattacctttactcttta |
100 |
Q |
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||||||||||||||||| ||||||| |||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || | | |
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| T |
5496866 |
ttttggatgggtatacaaagcttaaacatcattgatttatccaacaacaggttggtaggtggaattccaacttcaatatgctcattaccttacctttcca |
5496965 |
T |
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| Q |
101 |
tcctagaattgagcaacaacaatctcactgcagatttgtcttcaacctttcgaaactgtactcagctgaaaacactctcgctaaaatacaacaggttttt |
200 |
Q |
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| T |
5496966 |
tcctagaactgagcaacaacaatctctctcaagatttgtctttttccttccataattgtttttggctgaaaacgctctcgctaaaaaacaacaaattttt |
5497065 |
T |
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| Q |
201 |
tgggtctatgccaaacgagat |
221 |
Q |
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|||| |||| ||||| ||||| |
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| T |
5497066 |
tgggactataccaaaagagat |
5497086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 5491081 - 5491223
Alignment:
| Q |
1 |
ttttggatgggtatacagagcttaagcatcattgatctatccaacaacatgttggaaggtggaattccaacttcaatatgctcattacctttactcttta |
100 |
Q |
| |
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|||| ||||||||| || ||||||| ||||||||||||||||||||| ||||| |||||| |||||||||||||| |||||| ||||||||||||||| |
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| T |
5491081 |
tttttgatgggtatgcatagcttaaacatcattgatctatccaacaattggttggtaggtgggattccaacttcaatttgctcaatacctttactcttta |
5491180 |
T |
|
| Q |
101 |
tcctagaattgagcaacaacaatctcactgcagatttgtcttc |
143 |
Q |
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| T |
5491181 |
tcttagaactgagtaacaataatctctctgcagatttgtcttc |
5491223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 222
Target Start/End: Original strand, 5468380 - 5468545
Alignment:
| Q |
57 |
aggtggaattccaacttcaatatgctcattacctttactctttatcctagaattgagcaacaacaatctcactgcagatttgtcttcaacctttcgaaac |
156 |
Q |
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||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||| |||||||| ||||||| | ||| |
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| T |
5468380 |
aggtggaattccaacatcaatatgctcatctcctttactctttatcctagaattgagcaacaaccatctttctgcaaatttgtctccaaccttacaaaat |
5468479 |
T |
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| Q |
157 |
tgtactcagctgaaaacactctcgctaaaatacaacaggttttttgggtctatgccaaacgagata |
222 |
Q |
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||||||| |||||| |||||||| || |||| ||||||||||||||||| ||||| |||||| |
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| T |
5468480 |
tgtactctcttgaaaagtctctcgcttgaaaacaataggttttttgggtctataccaaaagagata |
5468545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 5477956 - 5478194
Alignment:
| Q |
1 |
ttttggatgggtatacagagcttaagcatcattgatctatccaacaacatgttggaaggtggaattccaacttcaatatgctcattacctttactcttta |
100 |
Q |
| |
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||||||||||| || ||||| ||| || ||||||||||| || |||| ||| ||||| ||||||||||||||||||||| | || || || |||| |
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| T |
5477956 |
ttttggatgggcatgcagagtttacaaattattgatctatcaaataacaatttgtcaggtgagattccaacttcaatatgctcactcccctttctattta |
5478055 |
T |
|
| Q |
101 |
tcctagaattgagcaacaacaatctcactgcagatttgtcttcaacctttcgaaactgtactcagctgaaaa--cactctcgctaaaatacaacaggttt |
198 |
Q |
| |
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||||| ||||| |||| ||||||||| | |||||||||| ||||| |||| ||| |||||||| ||| ||| | ||||| ||| || |||| |||||| |
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| T |
5478056 |
tcctacaattgggcaataacaatctctccacagatttgtcatcaacttttcaaaattgtactcacctgcaaactctctctctctagaaaacaataggttt |
5478155 |
T |
|
| Q |
199 |
tttgggtctatgccaaacgagatagccaacaacattcct |
237 |
Q |
| |
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||||||||||| ||||| || ||| |||| ||| ||||| |
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| T |
5478156 |
tttgggtctataccaaaagacataaccaaaaaccttcct |
5478194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 227
Target Start/End: Original strand, 5486145 - 5486344
Alignment:
| Q |
28 |
atcattgatctatccaacaacatgttggaaggtggaattccaacttcaatatgctcattacctttactctttatcctagaattgagcaacaacaatctca |
127 |
Q |
| |
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|||||||| |||||||||||| || ||||| |||||||||||||||||| ||| | | |||||| |||||||| ||||||||||| ||| ||| |
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| T |
5486145 |
atcattgacttatccaacaacagtctgtcaggtgaaattccaacttcaatatgttcactgcgtttactatttatcctggaattgagcaataacggtctgt |
5486244 |
T |
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| Q |
128 |
ctgcagatttgtcttcaacctttcgaaactgtactcagctgaaaacactctcgctaaaatacaacaggttttttgggtctatgccaaacgagatagccaa |
227 |
Q |
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| T |
5486245 |
ctggatagttgtcttcgtcctttcaaaattgtacaaggttgaaaacactctcactagtaaacaacaggtttttagggtctataccaaatgagataaccaa |
5486344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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