View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9773_high_18 (Length: 240)
Name: NF9773_high_18
Description: NF9773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9773_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 33741796 - 33741574
Alignment:
| Q |
1 |
ctcttttgccattgtattcaactcttcaacctgtaaccaaaaacatactctaaatataagatcccaaaagtgtatagagctttggtaatccaaatatnnn |
100 |
Q |
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| T |
33741796 |
ctcttttgccattgtattcaactcttcaacctgtaaccaaaaacatactctaaatataagatcccaaaagtgtatagagctttggtaatccaaatataaa |
33741697 |
T |
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| Q |
101 |
nnnncaccacataacaagaactagaacattacaaaatctggatataacactgaatgaagaaccaaattcataaagtgtataactaaactactgtgaaggt |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33741696 |
aaaacacctcataacaagaactagaacattacaaaatctggatataacactgaatgaagaaccaaattcataaagtgtataactaaactactgtgaaggt |
33741597 |
T |
|
| Q |
201 |
taatgctatatcttactgctaac |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
33741596 |
taatgctatatcttactgctaac |
33741574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 33619463 - 33619425
Alignment:
| Q |
1 |
ctcttttgccattgtattcaactcttcaacctgtaacca |
39 |
Q |
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||||||| |||||||||||||||| |||||||||||||| |
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| T |
33619463 |
ctcttttaccattgtattcaactcctcaacctgtaacca |
33619425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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