View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9773_high_19 (Length: 237)
Name: NF9773_high_19
Description: NF9773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9773_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 5501865 - 5501643
Alignment:
| Q |
1 |
tggatagatcaagataagtcaattttttaatcttatttaaggatagtggaatgctcacattcaggtagttatttgagagatccaagtccaacaaatgtga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5501865 |
tggatagatcaagataagtcaattttttaatcttatttaaggataaggggatgctcccattcaggcagttatttgagagatccaagtccaacaaatgtga |
5501766 |
T |
|
| Q |
101 |
catatcttcgccaatattggtaggtaatatttcagacagcgaattgtttcttaggtagagactcctcacattagaccaaatttggattgagcccttcaac |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
5501765 |
catatctttgccaatattggtaggtaatatttcagacagcgagttgtttcttaggtagagactgctcacattagaccaaatctggattgagcccttcaac |
5501666 |
T |
|
| Q |
201 |
aggttatgagagaggtcaactgt |
223 |
Q |
| |
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||||||||||| ||||||||||| |
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| T |
5501665 |
aggttatgagaaaggtcaactgt |
5501643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 5491051 - 5490831
Alignment:
| Q |
1 |
tggatagatcaagataagtcaattttttaatcttatttaaggatagtggaatgctcacattcaggtagttatttgagagatccaagtccaacaaatgtga |
100 |
Q |
| |
|
||||||||||||||||| |||| |||| ||||||||||| |||||||||||||| | ||||| ||||||| |||||||||||||| | |||| ||| |
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| T |
5491051 |
tggatagatcaagataactcaaattttggatcttatttaaagatagtggaatgctacctttcagatagttatgtgagagatccaagtaccttaaatatga |
5490952 |
T |
|
| Q |
101 |
catatcttcgccaatattggtaggtaatatttcagacagcgaattgtttcttaggtagagactcctcacattagaccaaatttggattgagcccttcaac |
200 |
Q |
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||| |||| ||||||||||||||| ||| || |||||| || ||||| |||||||||||| |||| || |||||| ||||||||||||||||| ||| |
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| T |
5490951 |
catctctttgccaatattggtagggaatgttccagacaaagagttgttccttaggtagagagcactcaaatcagaccagatttggattgagccctttaac |
5490852 |
T |
|
| Q |
201 |
aggttatgagagaggtcaact |
221 |
Q |
| |
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|||||||||| | ||||||| |
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| T |
5490851 |
tggttatgagaaaagtcaact |
5490831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 5496836 - 5496614
Alignment:
| Q |
1 |
tggatagatcaagataagtcaattttttaatcttatttaaggatagtggaatgctcacattcaggtagttatttgagagatccaagtccaacaaatgtga |
100 |
Q |
| |
|
||||||||||||||||| |||| |||| |||||| ||||| |||| |||||||||| |||| |||||||||||||| |||||||||||| |||||||| |
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| T |
5496836 |
tggatagatcaagataactcaaattttgaatcttgtttaaagataatggaatgctcccattgaggtagttatttgatagatccaagtccttaaaatgtga |
5496737 |
T |
|
| Q |
101 |
catatcttcgccaatattggtaggtaatatttcagacagcgaattgtttcttaggtagagactcctcacattagaccaaatttggattgagcccttcaac |
200 |
Q |
| |
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|| |||| ||||||||||||||||||| || ||||||| |||||||| |||| ||||||| |||||| || ||||||||| | ||||||| | || |
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| T |
5496736 |
tatctctttgccaatattggtaggtaatgttccagacagtgaattgttccttaagtagagagcactcacaccaggccaaatttgcactgagcccatgaag |
5496637 |
T |
|
| Q |
201 |
aggttatgagagaggtcaactgt |
223 |
Q |
| |
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|||||| ||| | ||||||||| |
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| T |
5496636 |
cggttataagaaaagtcaactgt |
5496614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 162
Target Start/End: Complemental strand, 5477925 - 5477765
Alignment:
| Q |
2 |
ggatagatcaagataagtcaattttttaatcttatttaaggatagtggaatgctcacattcaggtagttatttgagagatccaagtccaacaaatgtgac |
101 |
Q |
| |
|
|||||||||||||| | | || |||| ||||| ||||||||| | ||| || ||| | || |||| ||||||||| ||||||||||| | |||| |||| |
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|
| T |
5477925 |
ggatagatcaagatgatttaaattttgaatctcatttaaggagattgggattctcccgtttaggttgttatttgaaagatccaagtcgattaaatttgac |
5477826 |
T |
|
| Q |
102 |
atatcttcgccaatattggtaggtaatatttcagacagcgaattgtttcttaggtagagac |
162 |
Q |
| |
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|| ||||||||||||||||| |||| | | |||| | | ||||||| ||||||||||||| |
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|
| T |
5477825 |
atttcttcgccaatattggttggtactgtcccagataacaaattgttccttaggtagagac |
5477765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 5486088 - 5485928
Alignment:
| Q |
1 |
tggatagatcaagataagtcaattttttaatcttatttaaggatagtggaatgctcacattcaggtagttatttgagagatccaagtccaacaaatgtga |
100 |
Q |
| |
|
|||| |||||||||||| |||| |||| |||| |||| ||||| | ||| || ||| |||| | |||||| ||||||||||| |||| | |||||| || |
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| T |
5486088 |
tggacagatcaagataaatcaaattttgaatcctattcaaggacaatgggattctcccatttaagtagttgtttgagagatctaagtacctcaaatgcga |
5485989 |
T |
|
| Q |
101 |
catatcttcgccaatattggtaggtaatatttcagacagcgaattgtttcttaggtagaga |
161 |
Q |
| |
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||| |||| |||||||| ||| |||| | || |||| | | | ||||| |||||||||||| |
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|
| T |
5485988 |
catctctttgccaatataggttggtattgttccagataacaagttgttccttaggtagaga |
5485928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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