View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9773_high_22 (Length: 214)
Name: NF9773_high_22
Description: NF9773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9773_high_22 |
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| [»] scaffold0012 (3 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 29471334 - 29471127
Alignment:
| Q |
1 |
tgtgaagattgcattgggctctctttttcttcagcctggatggtagattcagccagttttgacatcacagcagctctattcgataaataaacaactccac |
100 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29471334 |
tgtgaagattgcattgggctcactttttcttcagcctggatggtaaattcagccagttttgacatcacagcagctctattcgataaataaacaactccac |
29471235 |
T |
|
| Q |
101 |
agttacatggatataatgtttgaggcggagtaagattttgaaatggaaacggcaattcttgtatgagagtattatccaagtgaatttctgttatattatt |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29471234 |
agttacattgatataatgtttgaggcggagtaagattttgaaatggaaacggcaattcttgtatgagagtattatccaagtgaatttctgttatattatt |
29471135 |
T |
|
| Q |
201 |
catctctc |
208 |
Q |
| |
|
|||||||| |
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|
| T |
29471134 |
catctctc |
29471127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 29663493 - 29663666
Alignment:
| Q |
5 |
aagattgcattgggctctctttttcttcagcctggatggtagattcagccagttttgacatcacagcagctctattcgataaataaacaactccacagtt |
104 |
Q |
| |
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||||||| || ||| || |||||| |||||||||||||||| |||| |||||||||||||| || | ||| | | ||| |||||| ||||||||| |
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| T |
29663493 |
aagattggatcgggatcactttttgttcagcctggatggtacattccaccagttttgacatcgcataattactagttggtaaggaaacaaatccacagtt |
29663592 |
T |
|
| Q |
105 |
acatggatataatgtttgaggcggagtaagattttgaaatggaaacggcaattcttgtatgagagtattatccaagt |
181 |
Q |
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||||||||||| ||| |||| ||||||||||||||||||||||||||||||||| |||| |||||| ||||||| |
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| T |
29663593 |
acatggatata---ttttaggcagagtaagattttgaaatggaaacggcaattcttttatgggagtatattccaagt |
29663666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 29689929 - 29690110
Alignment:
| Q |
1 |
tgtgaagattgcattgggctctctttttcttcagcctggatggtaga-ttcagccagttttgacatcacagcagctctattcgataaataaacaactcca |
99 |
Q |
| |
|
||||||||||| ||||||||| |||||| || ||||| |||| ||| |||||||| ||||||||||| || ||||||||| | || || | |||| |
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| T |
29689929 |
tgtgaagattgtattgggctcattttttcctcggcctgaatgg-agagttcagccatttttgacatcaaagaagctctatttggaaagcaagaatgtcca |
29690027 |
T |
|
| Q |
100 |
cagttacatggatataatgtttgaggcggagtaagattttgaaatggaaacggcaattcttgtatgagagtattatccaagtg |
182 |
Q |
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|
|||||||||||||| ||||||| ||| | ||||||||||||||||||||||| ||||||| |||| |||| | ||||||||| |
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| T |
29690028 |
cagttacatggataatatgtttggggctgtgtaagattttgaaatggaaacggtaattcttttatgggagtttcatccaagtg |
29690110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 29767911 - 29768092
Alignment:
| Q |
1 |
tgtgaagattgcattgggctctctttttcttcagcctggatggtagattcagccagttttgacatcacagcagctctattcgataaataaacaactccac |
100 |
Q |
| |
|
||||||||||||||| || || |||||||||||||| ||||||| ||||||| || |||||||||| || ||||||| | ||| || ||||| |
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| T |
29767911 |
tgtgaagattgcatttggttcattttttcttcagccttgatggtaagttcagccgattctgacatcacaacatctctatttggtaagcggccatatccac |
29768010 |
T |
|
| Q |
101 |
agttacatggatataatgtttgaggcggagtaagattttgaaatggaaacggcaattcttgtatgagagtattatccaagtg |
182 |
Q |
| |
|
||| ||||| | ||| |||||||| |||||||| |||||||| |||| || ||||||| |||| |||| | ||||||||| |
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| T |
29768011 |
agtcacatgaaacaaatctttgaggctgagtaagagtttgaaattgaaatggaaattcttttatgggagtttcatccaagtg |
29768092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 165
Target Start/End: Original strand, 28488347 - 28488414
Alignment:
| Q |
98 |
cacagttacatggatataatgtttgaggcggagtaagattttgaaatggaaacggcaattcttgtatg |
165 |
Q |
| |
|
||||||||||||||| ||||||||| || | |||||||||||||||||||| ||||| |||| |||| |
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|
| T |
28488347 |
cacagttacatggatgaaatgtttgaagctgggtaagattttgaaatggaaatggcaactcttctatg |
28488414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 165
Target Start/End: Original strand, 29800759 - 29800826
Alignment:
| Q |
98 |
cacagttacatggatataatgtttgaggcggagtaagattttgaaatggaaacggcaattcttgtatg |
165 |
Q |
| |
|
||||||||||||||| ||||||||| || | |||||||||||||||||||| ||||| |||| |||| |
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| T |
29800759 |
cacagttacatggatgaaatgtttgaagctgggtaagattttgaaatggaaatggcaactcttctatg |
29800826 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 113 - 180
Target Start/End: Complemental strand, 618136 - 618069
Alignment:
| Q |
113 |
ataatgtttgaggcggagtaagattttgaaatggaaacggcaattcttgtatgagagtattatccaag |
180 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||||| |||| |||| | ||||||| |
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|
| T |
618136 |
ataatgtttgaggttgtgtaagattttgaaatggaaacggcaattcttttatgggagtttcatccaag |
618069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 618233 - 618168
Alignment:
| Q |
1 |
tgtgaagattgcattgggctctctttttcttcagcctggatggtagattcagccagttttgacatc |
66 |
Q |
| |
|
|||||||||||||||| | || |||| |||||| |||||| ||| ||||||||||| |||||||| |
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|
| T |
618233 |
tgtgaagattgcattgcgttcactttctcttcattctggatagtaaattcagccagtcttgacatc |
618168 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 180
Target Start/End: Original strand, 236354 - 236419
Alignment:
| Q |
115 |
aatgtttgaggcggagtaagattttgaaatggaaacggcaattcttgtatgagagtattatccaag |
180 |
Q |
| |
|
||||||| ||| ||||||||||||| ||| |||||| ||||||||| ||||||||| | ||||||| |
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|
| T |
236354 |
aatgtttcaggtggagtaagattttaaaacggaaacagcaattcttttatgagagtttcatccaag |
236419 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 209973 - 210034
Alignment:
| Q |
5 |
aagattgcattgggctctctttttcttcagcctggatggtagattcagccagttttgacatc |
66 |
Q |
| |
|
|||||||||||| | || ||||||||||| || ||||||| ||||||||||| |||||||| |
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|
| T |
209973 |
aagattgcattgtgttcactttttcttcattcttgatggtaaattcagccagtgttgacatc |
210034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 210066 - 210123
Alignment:
| Q |
113 |
ataatgtttgaggcggagtaagattttgaaatggaaacggcaattcttgtatgagagt |
170 |
Q |
| |
|
||||||||| ||| | |||||||||| |||||||||||||||||||| |||| |||| |
|
|
| T |
210066 |
ataatgttttaggttgggtaagatttttaaatggaaacggcaattcttttatgggagt |
210123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 74521 - 74364
Alignment:
| Q |
1 |
tgtgaagattgcattgggctctctttttcttcagcctggatggtagattcagccagttttgacatcacagcagctctattcgataaataaacaactccac |
100 |
Q |
| |
|
|||||||||||| | |||||| ||||| |||| ||| |||| || |||||||||| |||| || || ||||||| | |||||||||| ||||| |
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|
| T |
74521 |
tgtgaagattgcttcgggctcacttttctttcacccttgatgataaattcagccagcagcgacaatgcaacaactctatttggtaaataaacagttccac |
74422 |
T |
|
| Q |
101 |
agttacatggatataatgtttgaggcggagtaagattttgaaatggaaacggcaattc |
158 |
Q |
| |
|
| || ||||||||| ||||| || || ||||| |||||| |||||||||||| ||||| |
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|
| T |
74421 |
atttgcatggatatgatgttggaagcagagtatgattttcaaatggaaacggaaattc |
74364 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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