View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9773_high_23 (Length: 212)
Name: NF9773_high_23
Description: NF9773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9773_high_23 |
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| [»] scaffold0042 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 2e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 23457213 - 23457345
Alignment:
| Q |
18 |
aggacgagtcactacattttgaaaagttgtacaactcgccccaagctcgccaatgacgagttggctctgaattaagtttgcacgtcttaagtgagcttgc |
117 |
Q |
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| T |
23457213 |
aggacgagtcactacattttgaaaagttgtacaactcgccccaagctcgccaatgacgagttggctctgaattaagtttgcacgtcttaagtgagcttgc |
23457312 |
T |
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| Q |
118 |
tcgcttacaacgtgtttcatgggtttcggaatt |
150 |
Q |
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| T |
23457313 |
tcgcttacaacgtgtttcatgggtttcggaatt |
23457345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 12058959 - 12058856
Alignment:
| Q |
18 |
aggacgagtcactacattttgaaaa-gttgtacaactcgccccaagctcgccaatgacgagttggctctgaattaagtttgcacgtcttaagtgagcttg |
116 |
Q |
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| T |
12058959 |
aggacgagtcaatacatcttgaaaaagttgtgtgactcgccccaagctccccaatggcgagttggctctg----gagtttgcacgccttaagtgagttta |
12058864 |
T |
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| Q |
117 |
ctcgctta |
124 |
Q |
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| T |
12058863 |
ctcgctta |
12058856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 15559766 - 15559662
Alignment:
| Q |
18 |
aggacgagtcactacattttgaaaa-gttgtacaactcgccccaagctcgccaatgacgagttggctctgaattaagtttgcacgtcttaagtgagcttg |
116 |
Q |
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| T |
15559766 |
aggacgaggcaatacattttgaaaaagttgtgcgactcgccccaagctcgccaatggctagttggctctg----gagtttgcacgccttaagtgagttta |
15559671 |
T |
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| Q |
117 |
ctcgcttac |
125 |
Q |
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| T |
15559670 |
ctcgcttac |
15559662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 32146513 - 32146398
Alignment:
| Q |
19 |
ggacgagtcactacattttga-aaagttgtacaactcgccccaagctcgccaatgacgagttggctctgaattaagtttgcacgtcttaagtgagcttgc |
117 |
Q |
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| T |
32146513 |
ggacgagtcaacacatttttagaaagttgtgcaactcaccccaagcccgcctatggcgagttggctctg----aagtttgcacgccttaaatgagtatac |
32146418 |
T |
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| Q |
118 |
tcgcttacaacgtgtttcat |
137 |
Q |
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| T |
32146417 |
tcgcttatagcgtgtttcat |
32146398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 21333455 - 21333351
Alignment:
| Q |
18 |
aggacgagtcactacattttgaaaa-gttgtacaactcgcc-ccaagctcgccaatgacgagttggctctgaattaagtttgcacgtcttaagtgagctt |
115 |
Q |
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| T |
21333455 |
aggacgagtcattacattttaaaaaagttgtgcaactcgcctccaagcttgccaaaggtgagttgactctgaa----gtttgcacgccttaagtgagttt |
21333360 |
T |
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| Q |
116 |
gctcgctta |
124 |
Q |
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| T |
21333359 |
actcgctta |
21333351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 14278378 - 14278306
Alignment:
| Q |
15 |
cataggacgagtcactacattttgaaaa-gttgtacaactcgccc-caagctcgccaatgacgagttggctct |
85 |
Q |
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| T |
14278378 |
cataggacgagttactatattttcaaaaagttgtactactcgtcctcaagctcgtcaatgacgagttggctct |
14278306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 7428 - 7383
Alignment:
| Q |
20 |
gacgagtcactacattttgaaaa-gttgtacaactcgccccaagct |
64 |
Q |
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| T |
7428 |
gacgagtcactatattttgaaaaagttgtacaacacgccccaagct |
7383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 14840 - 14795
Alignment:
| Q |
20 |
gacgagtcactacattttgaaaa-gttgtacaactcgccccaagct |
64 |
Q |
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| T |
14840 |
gacgagtcactatattttgaaaaagttgtacaacacgccccaagct |
14795 |
T |
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