View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9773_high_6 (Length: 340)
Name: NF9773_high_6
Description: NF9773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9773_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 330
Target Start/End: Complemental strand, 1984745 - 1984434
Alignment:
| Q |
19 |
atcaaacttgtaaaacaacctattgaacacttgttaaactctcaaaagaaagaagaggaaaaaccaaacgatgaaaactcaagtactctaaagaacaaaa |
118 |
Q |
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| T |
1984745 |
atcaaacttgtaaaacaacctattgaatactttttaaacactcaaaagaaagaagaggaaaaaccaaaagatgaaaactctagtactctaaagaacaaaa |
1984646 |
T |
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| Q |
119 |
cacccttggtggaggaaatcactattccttctgttgaacaacttgtgactgcgggggttaatttcttacctacaaatggaagcatatcaagcattaattt |
218 |
Q |
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| T |
1984645 |
cacccttggtggaggaaatcgctattccttctgttgaacaacttgtgactgcaggggttaatttcttacctgcaaaaggaagcatatcaagcattagttt |
1984546 |
T |
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| Q |
219 |
tgatgctaaaacaaacacttttcaccttcccacaattagtttggatgtgaacaccgaagttttctttagaaacttggttgcatacgaatcatcggttgga |
318 |
Q |
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| T |
1984545 |
tgatgctaaaacaaacacttttcaccttcccacaattagtttggatgtcaacaccgaagtttttcttcgaaacttggttgcatacgaatcatcggttgga |
1984446 |
T |
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| Q |
319 |
tccggacctttg |
330 |
Q |
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| T |
1984445 |
tcgggacctttg |
1984434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 119 - 330
Target Start/End: Complemental strand, 1977724 - 1977513
Alignment:
| Q |
119 |
cacccttggtggaggaaatcactattccttctgttgaacaacttgtgactgcgggggttaatttcttacctacaaatggaagcatatcaagcattaattt |
218 |
Q |
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| T |
1977724 |
cacctttgatggatgaaatcgctattccttctgttgagcaacttgtgcttgcaggagttaatttcttacctacaaatggaagcatatcaagcattagttt |
1977625 |
T |
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| Q |
219 |
tgatgctaaaacaaacacttttcaccttcccacaattagtttggatgtgaacaccgaagttttctttagaaacttggttgcatacgaatcatcggttgga |
318 |
Q |
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| T |
1977624 |
tgatgctaaaacaaacacttttcaccttcccatgattagattggatgttaacaccgaagtttttctaagaaacttggttgcatatgaatcatcggttgga |
1977525 |
T |
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| Q |
319 |
tccggacctttg |
330 |
Q |
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| T |
1977524 |
tcgggacctttg |
1977513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 133 - 326
Target Start/End: Original strand, 1948696 - 1948889
Alignment:
| Q |
133 |
gaaatcactattccttctgttgaacaacttgtgactgcgggggttaatttcttacctacaaatggaagcatatcaagcattaattttgatgctaaaacaa |
232 |
Q |
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| T |
1948696 |
gaaatcactattccttctgttaaagaacttgtgaaatcaggagtgaatttttctcctactaatgggagcatatcaagtattagttttgatgcaaaaacaa |
1948795 |
T |
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| Q |
233 |
acacttttcaccttcccacaattagtttggatgtgaacaccgaagttttctttagaaacttggttgcatacgaatcatcggttggatccggacc |
326 |
Q |
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| T |
1948796 |
gaactttttaccttcctattatcggtttggatgttaataccgaagtttttctaagaaacttggttgcgtatgaatcatcggttggatcgggacc |
1948889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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