View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9773_low_1 (Length: 636)
Name: NF9773_low_1
Description: NF9773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9773_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 39 - 630
Target Start/End: Complemental strand, 53955541 - 53954948
Alignment:
| Q |
39 |
gataaaggattgttggagaggtattcgaaaattatttatctagtgttgtcggaataagaccaagccatccaatttaatcaagaattgtcaat--gttcaa |
136 |
Q |
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| T |
53955541 |
gataaaggattgttggagaggtgttcaaaaattatttatctagtgtt--cggaataagaccgagccatccaatttaaacaagaattgtcaattggttcaa |
53955444 |
T |
|
| Q |
137 |
ccatggttcattcttatagtcgcgtagaactggatcaaatcggttcggtcgtgattgaatgtgttattagtttaattctttttgttttcttattttccnn |
236 |
Q |
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| T |
53955443 |
ccatggttcattcttatagtcgcgtagaactggatcgaatcggttcaatcaggattgaatgtgttattagtttaattctttttgttttcttatttttcaa |
53955344 |
T |
|
| Q |
237 |
nnnnnnnnnnnn-tgatttgtcatccggtttaatccattgaaccatgatcgagtgatcacaccgattcctatttttaaaatattgagtttatccaattaa |
335 |
Q |
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| T |
53955343 |
aaaataaaataaatgatttgtcatccggtttaatccattgaaccatgatcgagtgatcacaccgattcctatttttaaaatattgagtttatccaattaa |
53955244 |
T |
|
| Q |
336 |
gaacttgcttattgaaaaactatataatgagcacgaagagaatgtcccattgtccaagatatcaa---gttgttaatctctaaatagtaagtttagttaa |
432 |
Q |
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|||||||||||| |||| ||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
53955243 |
gaacttgcttatcgaaacactatataatgagcacgaagagaatgt-ccattgttcaagatatcaagttgttgttaatctctaaatagtaagtttagttaa |
53955145 |
T |
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| Q |
433 |
aagtatataatgagcacgaatgtccaagagatcaagctgttagtcttcaaatagtaagttttatagttttgattatttttaacattatgaaatgcttaac |
532 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
53955144 |
aagtatataatgagcacgaatgtccaagagatcaagctgttaatcttcaaatagtaagttttatagttttgatta-ttttaacattatgaaatgcttaac |
53955046 |
T |
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| Q |
533 |
ttcgtgtgaaacaatcatgtccttgtggtacctttcccccggggaatgtacctaccgacaaactggtgttttctatgtggactcttctcctttgcttc |
630 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
53955045 |
ttcgtgtgaaacaatcatgtccttgtggtacctttcccccggggaatgtacctaccgacaaactggtgttttctatgtggactcttctcttttacttc |
53954948 |
T |
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