View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9773_low_12 (Length: 292)
Name: NF9773_low_12
Description: NF9773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9773_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 14 - 282
Target Start/End: Original strand, 10072056 - 10072323
Alignment:
| Q |
14 |
tgttggactctagaacggttggctcattgtaatagttcaaatgatgtaattcgtcaacccaaatccacgaaaaaattcttcatatagtgataaaaaatgc |
113 |
Q |
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| T |
10072056 |
tgttggactctagcacggttggctcattgtaatagttcaaatgatgtaattcgtcaacccaaatccac-aaaaaattcttcatatagtgacaaaaaatgc |
10072154 |
T |
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| Q |
114 |
tattgatagcatttttctatcattgaatatagaatccatactttccatggatcaagtgctacgaatttcatcgttttgaactaataatatctatacaaaa |
213 |
Q |
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| T |
10072155 |
tattgatagcatttttctatcactgaatatagaatccatactttccatggatcaagtgctacgaatttcatcgttttgaactaataatatctatacaaaa |
10072254 |
T |
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| Q |
214 |
tattaattcatgtctttctcttaagagctaggtaaattccgagatctagagaaggagaacttgcctatg |
282 |
Q |
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| T |
10072255 |
tattaattcatgtctttctcataagagctaggtaaattccgagatctagagaaggagaacttgtctatg |
10072323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 262
Target Start/End: Original strand, 10103697 - 10103780
Alignment:
| Q |
177 |
aatttcatcgttttgaactaataatatctatacaaaatattaattcatgtctttctcttaagagctaggtaaattccgagatctag |
262 |
Q |
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| T |
10103697 |
aatttcatcgctttgaactaatataatctatac--aatattaattcatctcttccccataagagctacgtaacttccaagatctag |
10103780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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