View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9773_low_17 (Length: 270)
Name: NF9773_low_17
Description: NF9773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9773_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 39 - 255
Target Start/End: Original strand, 27093250 - 27093466
Alignment:
| Q |
39 |
ctcagattcaacactaacaaatatattgggtaacaattgttgattcaaatttgaaatttgaactatccaacaagtcaccactgtgttacataaattcaac |
138 |
Q |
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| T |
27093250 |
ctcagattcaactctaacaaatatattgggtaacaattgttgattcaaatttgaaatttgtactatccaacaagtcacctatgtgttacacaattacaac |
27093349 |
T |
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| Q |
139 |
ttctgcaccacacgttcatttatataggcaatcctccttcctatggcttacaaactttcgatatgggacaagatatctatctatctatacaaaagacatt |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27093350 |
ttctgcaccacacgttcatttatataggcaatcctccttcctatggcttacaaactttcgatatgggacaagatatctatctatctatacaaaagacatt |
27093449 |
T |
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| Q |
239 |
ttctgcaagttagagtt |
255 |
Q |
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||||||||||||||||| |
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| T |
27093450 |
ttctgcaagttagagtt |
27093466 |
T |
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