View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9773_low_19 (Length: 267)
Name: NF9773_low_19
Description: NF9773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9773_low_19 |
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| [»] scaffold0061 (1 HSPs) |
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| [»] scaffold0017 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 33 - 253
Target Start/End: Original strand, 37332400 - 37332620
Alignment:
| Q |
33 |
actctcgatttgcttgcacaaataagacattcaccttccagttccaccacccttccttactagttactgtacaacatagtttagagaaaaggggtgtgtg |
132 |
Q |
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| T |
37332400 |
actctcgatttgcttgcacaaataagacattcaccttccagttccaccacccttccttactagttactgtacaacatagtttagagaaaaggggtgtgtg |
37332499 |
T |
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| Q |
133 |
tgagcaaaattttgacatagataatatgtcactaacatgtatatagaaatcaatagaagtgcaaaatttgaaacatatgtgatgaaccttgacaggaaat |
232 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37332500 |
tgagcaaaattttgacatagataatatgtcactaacatgtatatagaaatcaatagaagtgcaaaatttgaaatatatgtgatgaaccttgacaggaaat |
37332599 |
T |
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| Q |
233 |
atggaattctatctttttgtc |
253 |
Q |
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||||||||||||||||||||| |
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| T |
37332600 |
atggaattctatctttttgtc |
37332620 |
T |
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Target: scaffold0061 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 53406 - 53354
Alignment:
| Q |
144 |
ttgacatagataatatgtcactaacatgtatatagaaatcaatagaagtgcaa |
196 |
Q |
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| T |
53406 |
ttgacatagataatttgtcactcaagtgtatatagaaatcaatagaagtgcaa |
53354 |
T |
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Target: scaffold0017 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 145228 - 145280
Alignment:
| Q |
144 |
ttgacatagataatatgtcactaacatgtatatagaaatcaatagaagtgcaa |
196 |
Q |
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| T |
145228 |
ttgacatagataatttgtcactcaagtgtatatagaaatcaatagaagtgcaa |
145280 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 40648694 - 40648746
Alignment:
| Q |
144 |
ttgacatagataatatgtcactaacatgtatatagaaatcaatagaagtgcaa |
196 |
Q |
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|||||||||||||| ||||||| | ||||||||||||||||||||||||||| |
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| T |
40648694 |
ttgacatagataatgtgtcactcaagtgtatatagaaatcaatagaagtgcaa |
40648746 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 25060895 - 25060846
Alignment:
| Q |
144 |
ttgacatagataatatgtcactaacatgtatatagaaatcaatagaagtg |
193 |
Q |
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|||||||| ||||| ||||||| | ||||||||||||||||||||||||| |
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| T |
25060895 |
ttgacatatataatgtgtcactcaaatgtatatagaaatcaatagaagtg |
25060846 |
T |
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