View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9773_low_2 (Length: 551)
Name: NF9773_low_2
Description: NF9773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9773_low_2 |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 18 - 551
Target Start/End: Original strand, 449600 - 450125
Alignment:
| Q |
18 |
attttcaaggcaaaacccaactctggcaccctttctcattacgtaacgaacctttatcatcacatttcgatggtaatgtgcttgacttcaacaaactctc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
449600 |
attttcaaggcaaaacccaactctggcaccctttctcattacgtaacgaacctttatcatcacatttcgatggtaatgtgcttgacttcaacaaactctc |
449699 |
T |
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| Q |
118 |
cgtactccatattggacacatgttctacttccatcagagcaccttgcctcaaaatagtcagactacccgtactgactgtaagtttggtgttgccttgtgt |
217 |
Q |
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|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
449700 |
cgtacttcatattggacacatgttctacttccatcggagcaccttgcctcaaaatagtcagaatacccgtactgactgtaagtttggtgttgcctcgtgt |
449799 |
T |
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| Q |
218 |
caggaggaacaaccttttgtaatcgtcacaactgagaaaaatcgaaagcctgttatgttccgttgcggggacgaccatttgacgacgatccccaacatgc |
317 |
Q |
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| T |
449800 |
caggaggaacaaccttttgtaatcgtcacaactgagaaaaatcaaaagcctgttatgttccgttgcggggacgaccatttgacgacgatccccaacatgt |
449899 |
T |
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| Q |
318 |
caaccccttgtaaagtcatgaactgtgcttttaaaggaaggccttgtgtggtagacagtaccaatcggactgtgatgattggaccagacatgagcattca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
449900 |
caaccccttgtaaagtcatgaactgtgcttttaaaggaaggccttgtgtggtagacagtaccaatcagactgtgatgattggaccagacatgagcattca |
449999 |
T |
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| Q |
418 |
tttgatggctcaggctgacccgtggtatggtgggagaagaaaattcttggtggcgagtagtgagttccagttgttgctagtgatttgctatacaaacggt |
517 |
Q |
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| T |
450000 |
tttgatggctcaggctgacccgtggtatggtgggagaagaaaattcttggtggcgagtagtgagttccagttgttgctagtgatttgctatacaaacggt |
450099 |
T |
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| Q |
518 |
gaccgtgttactgtatggattgatgtgtttaggc |
551 |
Q |
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| T |
450100 |
g--------actgtatggattgatgtgtttaggc |
450125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 551
Target Start/End: Complemental strand, 9395454 - 9395361
Alignment:
| Q |
458 |
aaattcttggtggcgagtagtgagttccagttgttgctagtgatttgctatacaaacggtgaccgtgttactgtatggattgatgtgtttaggc |
551 |
Q |
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||||||||||| | || |||||| || ||||||||||||||| | |||| ||| | ||| ||||||| |||| |||||||||||||||||| |
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| T |
9395454 |
aaattcttggtcgagactagtgactttcagttgttgctagtggatatatataaaaatgatgatcgtgttattgtaaggattgatgtgtttaggc |
9395361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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