View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9773_low_20 (Length: 267)
Name: NF9773_low_20
Description: NF9773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9773_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 42678250 - 42678504
Alignment:
| Q |
1 |
tacctgattcaagaccacaatgataatgatgaaggaagagcctagttcaaaaccaatcatgatccgtaaagtgtggggatacaatttgtcttgcgaattc |
100 |
Q |
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| T |
42678250 |
tacctgattcaagaccacaatgataatgatgaaggaagaccctggttcaaaaccaatcatgatccgtaaagtgtggggatacaatttgtcttgcgaattc |
42678349 |
T |
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| Q |
101 |
aagctcattagtcagttaattggtaaatacaatttcatctcaatggacactgaatttcctggaattgttcattcacccacagtccgccgtcgcctccaac |
200 |
Q |
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| T |
42678350 |
aagctcattagtcagttaattggtaaatacaatttcatctcaatggacactgaatttcctggaattgttcattcacccacagtccgccgtcgcctccaac |
42678449 |
T |
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| Q |
201 |
ctaacgagcaatacagttacttgaaagccaacgttgatgctctaaacatcattca |
255 |
Q |
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| T |
42678450 |
ctaacgagcaatacagttacttgaaagccaacgttgatgctctaaacattattca |
42678504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 255
Target Start/End: Complemental strand, 54704476 - 54704244
Alignment:
| Q |
26 |
atgatgaaggaagagcctagttcaaaaccaatcatgatccgtaaagtgtggggatacaatttgtcttgcgaattcaagctcattagtcagttaattggta |
125 |
Q |
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| T |
54704476 |
atgacgaaggaagatcctagttcagaaccaatcatgatacgtgaagtttgggcacacaatctgcaagaggaattcaatctcattcgtggatttgttggaa |
54704377 |
T |
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| Q |
126 |
aatacaatttcatctcaatggacactgaatttcctggaattgttcattcacccacagt---ccgccgtcgcctccaacctaacgagcaatacagttactt |
222 |
Q |
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| T |
54704376 |
catacaatttcatctcaatggatactgaatttcctggcgttatttttccactcaaagtcgaccaccgtcatctccaaccttacgaacaatacagttattt |
54704277 |
T |
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| Q |
223 |
gaaagccaacgttgatgctctaaacatcattca |
255 |
Q |
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| T |
54704276 |
gaaatcaaatgttgatgctcttaaaatcattca |
54704244 |
T |
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