View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9773_low_21 (Length: 267)
Name: NF9773_low_21
Description: NF9773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9773_low_21 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 216
Target Start/End: Complemental strand, 32391063 - 32390854
Alignment:
| Q |
7 |
caagtggtgtgtcagaatttcgtgtcatagtttcaaatattagaaatatgctaaaaaattaactatgcaaacataaaaactacctaaacagaaggattag |
106 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32391063 |
caagtggtgtgtcagaattttgtgtcatagtttcaaatattagaaatatgctaaaaaattaactatgtaaacataaaaactacctaaacagaaggattag |
32390964 |
T |
|
| Q |
107 |
ctacttggataattgtctacctagataaaattcataagcaataaatatgaacgaaattcaacaaagagatttcagaaaaattccaagagttgaatgaaag |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32390963 |
ctacttggataattgtctacctagataaaattcataagcaataaatatgaacgaaattcaacaaagagatttcagaaaaattccaagagtagaatgaaag |
32390864 |
T |
|
| Q |
207 |
aattacctta |
216 |
Q |
| |
|
|||||||||| |
|
|
| T |
32390863 |
aattacctta |
32390854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University