View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9773_low_23 (Length: 253)
Name: NF9773_low_23
Description: NF9773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9773_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 9573643 - 9573865
Alignment:
| Q |
9 |
tattcacaatcaatttcattagcattctccttttgtaagaataaggcagatgaatagtttcaacgtaatatgtcacattgaactgattttatagcttgag |
108 |
Q |
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| T |
9573643 |
tatttacaatcaatt-cattagcattctccttttgtaagaataaggcagatgaatagtttcatcgtaatatgtcacattgaactgattttataacttgag |
9573741 |
T |
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| Q |
109 |
gagtctactgtcaattaagcggtagccgatatgggatctagtcgcaaacatatatacatacatatgcaccaactcactcaacgatccttcaagtaccttg |
208 |
Q |
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| T |
9573742 |
gagtctactgtcaattaagcggtagccaatatgggctctagtcgcaaacatatatacacacatatgcaccaactcactcaacgatccttcaagtaccttg |
9573841 |
T |
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| Q |
209 |
acaataagtgcttatttcccagtg |
232 |
Q |
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|||||||||||||||||||||||| |
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| T |
9573842 |
acaataagtgcttatttcccagtg |
9573865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 159
Target Start/End: Original strand, 9578302 - 9578440
Alignment:
| Q |
23 |
ttcattagcattctccttttgtaagaataaggcagatgaatagtttcaacgtaatatgtcaca---ttgaactgattttatagcttgaggagtctactgt |
119 |
Q |
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||||||| |||||||||||| |||| ||||| |||||||||||||| | |||||||||| ||||||||||||||||| |||| | |||||||| |
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| T |
9578302 |
ttcattaacattctcctttt-taagtataagacagatgaatagtttgataaatatatgtcacaatattgaactgattttatagtttgaacaatctactgt |
9578400 |
T |
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| Q |
120 |
caattaagcggtagccgatatgggatctagtcgcaaacat |
159 |
Q |
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| T |
9578401 |
caattaagcggtatccgatatgggctctagtcacaaacat |
9578440 |
T |
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