View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9773_low_25 (Length: 247)

Name: NF9773_low_25
Description: NF9773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9773_low_25
NF9773_low_25
[»] chr1 (19 HSPs)
chr1 (1-133)||(9083418-9083550)
chr1 (139-217)||(46626324-46626402)
chr1 (139-217)||(19322344-19322422)
chr1 (146-214)||(33075659-33075727)
chr1 (146-214)||(22198910-22198978)
chr1 (139-214)||(38894764-38894839)
chr1 (146-214)||(1826809-1826877)
chr1 (146-214)||(29844884-29844952)
chr1 (146-214)||(42678390-42678458)
chr1 (152-217)||(16300411-16300476)
chr1 (146-217)||(52306085-52306156)
chr1 (139-217)||(19400740-19400818)
chr1 (146-214)||(10766202-10766270)
chr1 (153-217)||(50557850-50557913)
chr1 (146-217)||(4890114-4890185)
chr1 (152-211)||(28570747-28570806)
chr1 (152-217)||(47134726-47134791)
chr1 (146-217)||(1367307-1367378)
chr1 (139-217)||(51971272-51971349)
[»] chr8 (18 HSPs)
chr8 (139-217)||(24053923-24054001)
chr8 (139-217)||(36776413-36776491)
chr8 (146-217)||(25346050-25346121)
chr8 (146-217)||(42245732-42245803)
chr8 (139-217)||(9472161-9472238)
chr8 (139-214)||(40587695-40587770)
chr8 (152-214)||(1942811-1942873)
chr8 (139-217)||(40616094-40616172)
chr8 (151-217)||(41972977-41973043)
chr8 (152-214)||(8760723-8760785)
chr8 (152-214)||(25836268-25836330)
chr8 (153-217)||(44389005-44389069)
chr8 (152-211)||(8162781-8162840)
chr8 (146-217)||(18378802-18378873)
chr8 (146-217)||(41534248-41534319)
chr8 (152-214)||(32844171-32844233)
chr8 (139-206)||(45434999-45435066)
chr8 (146-176)||(41152684-41152714)
[»] chr2 (13 HSPs)
chr2 (141-217)||(19486200-19486276)
chr2 (146-214)||(17836983-17837051)
chr2 (139-217)||(10876571-10876647)
chr2 (146-214)||(32677186-32677254)
chr2 (139-217)||(42781020-42781098)
chr2 (146-214)||(9920912-9920980)
chr2 (146-217)||(10050189-10050260)
chr2 (146-196)||(18096507-18096557)
chr2 (151-217)||(19486111-19486177)
chr2 (146-217)||(24520882-24520953)
chr2 (146-217)||(2952773-2952844)
chr2 (146-217)||(4292782-4292853)
chr2 (146-217)||(9545775-9545846)
[»] chr7 (16 HSPs)
chr7 (139-217)||(7857009-7857086)
chr7 (146-214)||(29467767-29467835)
chr7 (139-214)||(44804529-44804604)
chr7 (142-217)||(34872181-34872256)
chr7 (146-217)||(35156995-35157066)
chr7 (152-214)||(24684636-24684698)
chr7 (146-217)||(29684113-29684184)
chr7 (146-214)||(3791495-3791563)
chr7 (146-196)||(39276629-39276679)
chr7 (146-217)||(11840447-11840518)
chr7 (146-217)||(21600970-21601041)
chr7 (146-217)||(39651148-39651219)
chr7 (146-217)||(27737741-27737812)
chr7 (146-196)||(21670813-21670863)
chr7 (156-217)||(9143502-9143563)
chr7 (152-196)||(688085-688129)
[»] chr6 (6 HSPs)
chr6 (139-217)||(9737752-9737830)
chr6 (146-214)||(4897497-4897565)
chr6 (146-196)||(15045567-15045617)
chr6 (140-217)||(35133184-35133260)
chr6 (140-217)||(33328277-33328354)
chr6 (152-196)||(6969316-6969360)
[»] chr5 (13 HSPs)
chr5 (139-217)||(36886968-36887046)
chr5 (144-217)||(30754423-30754496)
chr5 (139-217)||(17643385-17643463)
chr5 (152-214)||(6305452-6305514)
chr5 (152-214)||(43138549-43138611)
chr5 (146-214)||(12592471-12592539)
chr5 (152-211)||(754450-754509)
chr5 (146-217)||(3088031-3088102)
chr5 (153-216)||(12422345-12422408)
chr5 (146-217)||(25698717-25698788)
chr5 (146-217)||(30140518-30140589)
chr5 (166-216)||(42977833-42977883)
chr5 (146-175)||(26602210-26602239)
[»] chr4 (24 HSPs)
chr4 (139-217)||(13171634-13171712)
chr4 (139-217)||(20588571-20588649)
chr4 (139-217)||(36743201-36743279)
chr4 (139-217)||(50119957-50120035)
chr4 (139-216)||(51347497-51347574)
chr4 (139-217)||(3757735-3757813)
chr4 (139-217)||(24547340-24547418)
chr4 (146-217)||(30529278-30529349)
chr4 (146-214)||(24948289-24948357)
chr4 (146-214)||(39406234-39406302)
chr4 (146-217)||(17730449-17730520)
chr4 (139-214)||(43021901-43021976)
chr4 (146-214)||(29712386-29712454)
chr4 (152-214)||(8956938-8957000)
chr4 (152-214)||(8986910-8986972)
chr4 (152-214)||(37349808-37349870)
chr4 (146-214)||(53991554-53991622)
chr4 (146-217)||(3821198-3821269)
chr4 (146-210)||(35716305-35716369)
chr4 (152-211)||(9888895-9888954)
chr4 (146-217)||(39716717-39716788)
chr4 (146-214)||(578607-578675)
chr4 (152-196)||(5752473-5752517)
chr4 (139-217)||(16895994-16896072)
[»] chr3 (12 HSPs)
chr3 (139-217)||(29530561-29530639)
chr3 (139-217)||(26102150-26102228)
chr3 (146-217)||(19368941-19369012)
chr3 (139-214)||(35855213-35855288)
chr3 (139-217)||(8528103-8528181)
chr3 (146-214)||(11955528-11955596)
chr3 (139-217)||(28981817-28981895)
chr3 (139-217)||(40831926-40832004)
chr3 (146-210)||(22473660-22473724)
chr3 (152-196)||(18682511-18682555)
chr3 (146-217)||(55297343-55297414)
chr3 (152-196)||(8393585-8393629)
[»] scaffold0009 (2 HSPs)
scaffold0009 (139-216)||(108556-108633)
scaffold0009 (146-214)||(225451-225519)
[»] scaffold0385 (1 HSPs)
scaffold0385 (146-214)||(8303-8371)
[»] scaffold0381 (1 HSPs)
scaffold0381 (152-211)||(9591-9650)
[»] scaffold0057 (1 HSPs)
scaffold0057 (146-217)||(20579-20650)
[»] scaffold0759 (1 HSPs)
scaffold0759 (152-196)||(5912-5956)


Alignment Details
Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 9083550 - 9083418
Alignment:
Q  1 agcaaactgtccaaactggagttctttgattgtatgcttacacacatatttagtttaagattatttaatataatcaatatatgcttgatctgtaagaatg 100  Q
    |||| ||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9083550 agcacactctccaaactggagttctttgactgtatgcttacacacatattgagtttaagattatttaatacaatcaatatatgcttgatctgtaagaatg 9083451  T
Q  101 aaagggtggtccttttttgacctcatcgattat 133  Q
    |||||||||||||||||||||||||||||||||    
T  9083450 aaagggtggtccttttttgacctcatcgattat 9083418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 46626402 - 46626324
Alignment:
Q  139 taataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||| |||||| ||||||||||||||||||||    
T  46626402 taataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 46626324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 19322422 - 19322344
Alignment:
Q  139 taataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||||||| |||||||||||||||||||||||||||  |||||||||| |||||| || |||||||||||||||||    
T  19322422 taataagaaaataaatgtcccttgaatttaccattttgcccctataaggggcaatttggtattctacttattggttgag 19322344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 33075727 - 33075659
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggtt 214  Q
    ||||||||||||||||||||||||||||||||  |||||||||| |||||| |||||||||||||||||    
T  33075727 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 33075659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 22198978 - 22198910
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggtt 214  Q
    ||||||||||||||||||||||| ||||||||  |||||||||| |||||| |||||||||||||||||    
T  22198978 aaaagaaatgtcccttgaatttatcattttgcccctataaggggcaatttggtaatctacttattggtt 22198910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 38894764 - 38894839
Alignment:
Q  139 taataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggtt 214  Q
    ||||||||||  |||||||| ||||||||||||||||||  |||||||||| |||||| |||||||||||||||||    
T  38894764 taataagaaagtaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 38894839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 1826809 - 1826877
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggtt 214  Q
    ||||| |||||||||||||||||||||||||  ||||||||||| |||||| ||||||| |||||||||    
T  1826809 aaaagtaatgtcccttgaatttaccattttggctctataaggggcaatttggtaatctatttattggtt 1826877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 29844952 - 29844884
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggtt 214  Q
    |||||||||||||| || ||||||||||||||  |||||||||| |||||| |||||||||||||||||    
T  29844952 aaaagaaatgtcccatggatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 29844884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 42678390 - 42678458
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggtt 214  Q
    |||||||||||||| |||||||||||||||    |||||||||| ||||||||||||||||||||||||    
T  42678390 aaaagaaatgtcccatgaatttaccattttatccctataaggggcaatttgataatctacttattggtt 42678458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 16300411 - 16300476
Alignment:
Q  152 aatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||||||||||||||||||||||| |||||||||| |||||| |||  |||| ||||||||||    
T  16300411 aatgtcccttgaatttaccattttgctcctataaggggcaatttggtaaattactaattggttgag 16300476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 52306085 - 52306156
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||||| |||||| |||||||||||||||  |||||||||| ||||||||||  |||| ||||||||||    
T  52306085 aaaagaaatatccctttaatttaccattttgcccctataaggggcaatttgataaattactaattggttgag 52306156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 19400740 - 19400818
Alignment:
Q  139 taataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    |||||||||||   |||||||||||||||||||||||||   |||||||||||||| | ||||||| | ||||||||||    
T  19400740 taataagaaaatccatgtcccttgaatttaccattttgcccatataaggggtaattcggtaatctattaattggttgag 19400818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 10766202 - 10766270
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggtt 214  Q
    |||||||||||||  || ||||||||||||||  |||||||||  |||||| |||||||||||||||||    
T  10766202 aaaagaaatgtcctatggatttaccattttgcccctataagggtcaatttggtaatctacttattggtt 10766270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 50557850 - 50557913
Alignment:
Q  153 atgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||| |||||||||||||||| | |||||||||| |||||| ||||||||| ||||||||||    
T  50557850 atgtcccatgaatttaccattttg-tcctataaggggcaatttggtaatctactaattggttgag 50557913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 4890114 - 4890185
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||||||||| |||||||||||||||||| ||||| ||||| |||||| |||  || ||||||| ||||    
T  4890114 aaaagaaatgtcctttgaatttaccattttgcctctattaggggcaatttggtaaattaattattggctgag 4890185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 28570747 - 28570806
Alignment:
Q  152 aatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattg 211  Q
    |||||||| |||||||||||||||||  |||||||||  |||||| ||||||||||||||    
T  28570747 aatgtcccatgaatttaccattttgcccctataagggtcaatttggtaatctacttattg 28570806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 47134726 - 47134791
Alignment:
Q  152 aatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||| ||||||||||||||||||  |||||||||| |||||| |||  |||| ||||||||||    
T  47134726 aatgtccattgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 47134791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 1367307 - 1367378
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||||||||| ||||||||||||||||||  |||| ||||| |||||| |||  || ||||||| ||||    
T  1367307 aaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggctgag 1367378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 51971349 - 51971272
Alignment:
Q  139 taataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    |||||||||||   |||||||||||| |||||||||||   |||||| |||||||||| ||||||| | ||||||||||    
T  51971349 taataagaaaattcatgtcccttgaagttaccattttgtccctataa-gggtaatttggtaatctattaattggttgag 51971272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 24053923 - 24054001
Alignment:
Q  139 taataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||    
T  24053923 taataagaaaagaaatgtcccttgaatttaccattttgctcctataaggggcaatttggtaatctacttattggttgag 24054001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 36776413 - 36776491
Alignment:
Q  139 taataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||| |||||| ||||||||||||||||||||    
T  36776413 taataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 36776491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 25346050 - 25346121
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||||||||| |||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||    
T  25346050 aaaagaaatgtccattgaatttaccattttgcctctataaggggcaatttggtaatctacttattggttgag 25346121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 42245803 - 42245732
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    |||||||||||| |||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  42245803 aaaagaaatgtcacttgaattcaccattttgcccctataaggggtaatttgataatctacttattggttgag 42245732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 9472161 - 9472238
Alignment:
Q  139 taataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||| ||| |||||| ||||||||||||||||||||    
T  9472161 taataagaaaagaaatgtcccttgaaattaccattttgcctctataa-gggcaatttggtaatctacttattggttgag 9472238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 40587770 - 40587695
Alignment:
Q  139 taataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggtt 214  Q
    ||||||||||| |||||||| ||||||||||||||||||  |||||||||| |||||| |||||||||||||||||    
T  40587770 taataagaaaataaatgtccattgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 40587695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 1942811 - 1942873
Alignment:
Q  152 aatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggtt 214  Q
    |||||||| ||||||||||||||||| ||||||||||| |||||| |||||||||||||||||    
T  1942811 aatgtcccatgaatttaccattttgcctctataaggggcaatttggtaatctacttattggtt 1942873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 40616172 - 40616094
Alignment:
Q  139 taataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    |||||||||||   |||||||||||||||||||||||||| ||||||| || |||||| ||||||||| ||||||||||    
T  40616172 taataagaaaatccatgtcccttgaatttaccattttgctcctataagaggcaatttggtaatctactaattggttgag 40616094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 41972977 - 41973043
Alignment:
Q  151 aaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    |||||||||||||||||||||||||||  |||||||||| |||||| ||||||||| ||||||||||    
T  41972977 aaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctactaattggttgag 41973043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 8760723 - 8760785
Alignment:
Q  152 aatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggtt 214  Q
    |||||||| |||||||||||||||||  |||||||||| |||||| |||||||||||||||||    
T  8760723 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 8760785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 25836330 - 25836268
Alignment:
Q  152 aatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggtt 214  Q
    |||||||| |||||||||||||||||  |||||||||| |||||| |||||||||||||||||    
T  25836330 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 25836268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 44389069 - 44389005
Alignment:
Q  153 atgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||||||||||||||||||| |   |||||||||||||||| ||||||| | ||||||||||    
T  44389069 atgtcccttgaatttaccatttttcccttataaggggtaatttggtaatctattaattggttgag 44389005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 8162840 - 8162781
Alignment:
Q  152 aatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattg 211  Q
    |||||||| |||||||||||||||||  |||||||||  |||||| ||||||||||||||    
T  8162840 aatgtcccatgaatttaccattttgcccctataagggtcaatttggtaatctacttattg 8162781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 18378873 - 18378802
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||||||||| ||||||||| |||||||| ||||| ||||| |||||| |||  || ||||||||||||    
T  18378873 aaaagaaatgtcctttgaatttatcattttgcctctattaggggcaatttggtaaattaattattggttgag 18378802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 41534319 - 41534248
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    |||| ||||||||| |||||||||||||||||| |||||||||  ||||||||||  || | ||||||||||    
T  41534319 aaaataaatgtcccatgaatttaccattttgctcctataagggacaatttgataaattattaattggttgag 41534248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 32844171 - 32844233
Alignment:
Q  152 aatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggtt 214  Q
    |||||||| | |||||||||||||||  | |||||||| |||||| |||||||||||||||||    
T  32844171 aatgtcccataaatttaccattttgccccgataaggggcaatttggtaatctacttattggtt 32844233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 45434999 - 45435066
Alignment:
Q  139 taataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctact 206  Q
    |||||||||||   ||||| |||||||||||||||||||   ||||||||| |||||| |||||||||    
T  45434999 taataagaaaatccatgtcacttgaatttaccattttgcccttataaggggcaatttggtaatctact 45435066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 176
Target Start/End: Original strand, 41152684 - 41152714
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttg 176  Q
    |||||||||||||||||||||||||||||||    
T  41152684 aaaagaaatgtcccttgaatttaccattttg 41152714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 19486200 - 19486276
Alignment:
Q  141 ataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||| |||||| ||||||||||||||||||||    
T  19486200 ataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 19486276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 17836983 - 17837051
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggtt 214  Q
    ||||||||||||||||||||||||||||||||  |||||||||| |||||| |||||||||||||||||    
T  17836983 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 17837051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 10876647 - 10876571
Alignment:
Q  139 taataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    |||||||||||||||||||||||||||||||||||||||  |  ||||||| |||||| ||||||||||||||||||||    
T  10876647 taataagaaaagaaatgtcccttgaatttaccattttgc--ccctaaggggcaatttggtaatctacttattggttgag 10876571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 32677254 - 32677186
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggtt 214  Q
    |||| |||||||||||||||||||||||||||  |||||||||| |||||| |||||||||||||||||    
T  32677254 aaaataaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 32677186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 42781020 - 42781098
Alignment:
Q  139 taataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    |||||||||||||||||||||||||||||| |||||||   || ||||||| |||||| ||||||| ||||||||||||    
T  42781020 taataagaaaagaaatgtcccttgaatttatcattttgtccctgtaaggggcaatttggtaatctatttattggttgag 42781098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 9920980 - 9920912
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggtt 214  Q
    |||||||||||||| || ||||||||||||||  |||||||||| |||||| |||||||||||||||||    
T  9920980 aaaagaaatgtcccatggatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 9920912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 10050260 - 10050189
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||||||||| ||||||||||||||||||  |||| ||||| ||||||||||  |||| ||||||||||    
T  10050260 aaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttgataaattactaattggttgag 10050189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 18096507 - 18096557
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttg 196  Q
    ||||||||||||| ||||||||||||||||||  |||||||||||||||||    
T  18096507 aaaagaaatgtcctttgaatttaccattttgcccctataaggggtaatttg 18096557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 19486177 - 19486111
Alignment:
Q  151 aaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    |||| ||| ||||||||| ||||||||  |||||||||| |||||| ||||||||||||||||||||    
T  19486177 aaatatccattgaatttatcattttgcccctataaggggcaatttggtaatctacttattggttgag 19486111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 24520882 - 24520953
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    |||||||||||||||||||||||  ||||||| ||||||||| | |||||| |||  |||| ||||||||||    
T  24520882 aaaagaaatgtcccttgaatttataattttgcctctataaggagcaatttggtaaattactaattggttgag 24520953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 2952773 - 2952844
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||||||||| ||||||||||||||||||  |||| ||||| |||||| |||  || ||||||| ||||    
T  2952773 aaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggctgag 2952844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 4292853 - 4292782
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||||||||| ||||||||||||||||||| |||| | ||| |||||| |||  || ||||||| ||||    
T  4292853 aaaagaaatgtcctttgaatttaccattttgctcctattaagggcaatttggtaaattaattattggctgag 4292782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 9545846 - 9545775
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||||||||| ||||||||||||||||||  |||| ||||| |||||| |||  || ||||||| ||||    
T  9545846 aaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggctgag 9545775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 7857086 - 7857009
Alignment:
Q  139 taataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||| ||||||||||||    
T  7857086 taataagaaaagaaatgtcccttgaatttaccgttttgtttctataa-gggtaatttgataatctatttattggttgag 7857009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 29467767 - 29467835
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggtt 214  Q
    ||||||||||||||||||||||||||||||||  |||||||||| |||||| |||||||||||||||||    
T  29467767 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 29467835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 44804529 - 44804604
Alignment:
Q  139 taataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggtt 214  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||||| |||||| ||||||| |||||||||    
T  44804529 taataagaaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttggtaatctatttattggtt 44804604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 217
Target Start/End: Original strand, 34872181 - 34872256
Alignment:
Q  142 taagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||||||||||||| ||||| |||||||||||   |||||||||| |||||| ||||||||||||||||||||    
T  34872181 taagaaaagaaatgtcctttgaacttaccattttgtccctataaggggcaatttggtaatctacttattggttgag 34872256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 35157066 - 35156995
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    |||||||||||| |||||||||||||||||||  |||||||||| |||||| |||||||||||| |||||||    
T  35157066 aaaagaaatgtcacttgaatttaccattttgcccctataaggggcaatttggtaatctacttatcggttgag 35156995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 24684698 - 24684636
Alignment:
Q  152 aatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggtt 214  Q
    |||||||| ||||||||||||||||| ||||||||||| |||||| |||||||||||||||||    
T  24684698 aatgtcccatgaatttaccattttgcctctataaggggcaatttggtaatctacttattggtt 24684636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 29684184 - 29684113
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||||||| |||||||||||||||||| |  |||||||||| |||||| ||||||||| ||||||||||    
T  29684184 aaaagaaatgtgccttgaatttaccattttacccctataaggggcaatttggtaatctactaattggttgag 29684113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 3791495 - 3791563
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggtt 214  Q
    |||||||||||||  || ||||||||||||||  |||||||||| |||||| |||||||||||||||||    
T  3791495 aaaagaaatgtcctatggatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 3791563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 39276629 - 39276679
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttg 196  Q
    ||||||||||||||||||||||||||||||||  |||||| ||||||||||    
T  39276629 aaaagaaatgtcccttgaatttaccattttgcccctataaagggtaatttg 39276679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 11840518 - 11840447
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||||||||| ||||||||||||||||||  |||||||||| |||||| |||  || | ||||||||||    
T  11840518 aaaagaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaaattattaattggttgag 11840447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 21601041 - 21600970
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||||||||| ||||||||||||||||||  |||||||||| |||||| |||  || | ||||||||||    
T  21601041 aaaagaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaaattattaattggttgag 21600970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 39651219 - 39651148
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||||||||| ||||||||||||||||||  |||| ||||| |||||| |||  |||| ||||||||||    
T  39651219 aaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattactaattggttgag 39651148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 27737812 - 27737741
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    |||||||| ||||||||||||||||||||| |  |||||| || ||||||| |||  |||| ||||||||||    
T  27737812 aaaagaaaagtcccttgaatttaccattttacccctataaaggataatttggtaaattactaattggttgag 27737741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 21670863 - 21670813
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttg 196  Q
    |||||||||||||||||||||||| |||||||  |||||| || |||||||    
T  21670863 aaaagaaatgtcccttgaatttactattttgcccctataaaggataatttg 21670813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 9143502 - 9143563
Alignment:
Q  156 tcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||||||||||||||||||  |||||||||| |||||| |||  |||| ||| ||||||    
T  9143502 tcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaatttgttgag 9143563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 688085 - 688129
Alignment:
Q  152 aatgtcccttgaatttaccattttgcttctataaggggtaatttg 196  Q
    ||||||| ||||||||||||||||||  |||||||||| ||||||    
T  688085 aatgtcctttgaatttaccattttgcccctataaggggcaatttg 688129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 9737830 - 9737752
Alignment:
Q  139 taataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||||| |||||||||||||| ||||||||||||    
T  9737830 taataagaaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttgataatctatttattggttgag 9737752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 4897565 - 4897497
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggtt 214  Q
    ||||||||||||||||||||||||||||||||  |||||||||| |||||| ||||||| |||||||||    
T  4897565 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctatttattggtt 4897497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 15045617 - 15045567
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttg 196  Q
    ||||||||||||||||||||||||||||||||  |||||| ||||||||||    
T  15045617 aaaagaaatgtcccttgaatttaccattttgcccctataaagggtaatttg 15045567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 35133184 - 35133260
Alignment:
Q  140 aataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||||||   |||||| || ||||||||||||||| ||||||| ||| |||||||||||||||| ||||||||||    
T  35133184 aataagaaaatccatgtcctttaaatttaccattttgcctctataa-gggcaatttgataatctactaattggttgag 35133260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 33328354 - 33328277
Alignment:
Q  140 aataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||||||   |||||| || |||||||||||||||| ||| |||||| |||||| || |||||| ||||||||||    
T  33328354 aataagaaaatccatgtcctttaaatttaccattttgctcctacaaggggcaatttggtagtctactaattggttgag 33328277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 6969360 - 6969316
Alignment:
Q  152 aatgtcccttgaatttaccattttgcttctataaggggtaatttg 196  Q
    ||||||||||||||||||||||||||  |||||||||| ||||||    
T  6969360 aatgtcccttgaatttaccattttgcccctataaggggcaatttg 6969316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 36887046 - 36886968
Alignment:
Q  139 taataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||| |||||| |||||||||||||| |||||    
T  36887046 taataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattgattgag 36886968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 144 - 217
Target Start/End: Original strand, 30754423 - 30754496
Alignment:
Q  144 agaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||||||||||| ||||||||||||||||||  |||||||||| |||||| ||||||||||||||||||||    
T  30754423 agaaaagaaatgtcctttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 30754496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 17643463 - 17643385
Alignment:
Q  139 taataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||||||| |||||||||||||||||| ||||||||   ||||||||| |||||| ||||||| ||||||||||||    
T  17643463 taataagaaaataaatgtcccttgaatttatcattttgcccttataaggggcaatttggtaatctatttattggttgag 17643385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 6305514 - 6305452
Alignment:
Q  152 aatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggtt 214  Q
    |||||||| |||||||||||||||||  |||||||||| |||||| |||||||||||||||||    
T  6305514 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 6305452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 43138611 - 43138549
Alignment:
Q  152 aatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggtt 214  Q
    |||||||| |||||||||||||||||  |||||||||| |||||| |||||||||||||||||    
T  43138611 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 43138549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 12592539 - 12592471
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggtt 214  Q
    |||||||||||||| ||||||||||| ||| |  |||||||||| |||||| |||||||||||||||||    
T  12592539 aaaagaaatgtcccatgaatttaccagtttacccctataaggggcaatttggtaatctacttattggtt 12592471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 754509 - 754450
Alignment:
Q  152 aatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattg 211  Q
    |||||||| |||||||||||||||||  |||||||||  |||||| ||||||||||||||    
T  754509 aatgtcccatgaatttaccattttgcccctataagggtcaatttggtaatctacttattg 754450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 3088102 - 3088031
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||| ||||||||||||||||||||||||||  |||||||||| |||||| |||  || | ||||||||||    
T  3088102 aaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattattaattggttgag 3088031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 12422408 - 12422345
Alignment:
Q  153 atgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttga 216  Q
    |||||| |||| |||||||||||||  |||||||||| |||||| ||||||||| |||||||||    
T  12422408 atgtcctttgattttaccattttgcccctataaggggcaatttggtaatctactaattggttga 12422345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 25698788 - 25698717
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||||||||| ||||||||||||||||||  |||| ||||| |||||| |||  || ||||||||||||    
T  25698788 aaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggttgag 25698717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 30140518 - 30140589
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||||||||| ||||||||||||||||||  |||| | |||||||||| |||  |||| ||||||||||    
T  30140518 aaaagaaatgtcctttgaatttaccattttgcccctattaagggtaatttggtaaattactaattggttgag 30140589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 42977883 - 42977833
Alignment:
Q  166 ttaccattttgcttctataaggggtaatttgataatctacttattggttga 216  Q
    ||||||||||||  |||||||||| |||||| |||||||||||||||||||    
T  42977883 ttaccattttgcccctataaggggcaatttggtaatctacttattggttga 42977833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 175
Target Start/End: Complemental strand, 26602239 - 26602210
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccatttt 175  Q
    ||||||||||||||||||||||||||||||    
T  26602239 aaaagaaatgtcccttgaatttaccatttt 26602210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 13171634 - 13171712
Alignment:
Q  139 taataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||||||| |||||||||||||||||||||||||||  |||||||||| |||||| ||||||||||||||||||||    
T  13171634 taataagaaaataaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 13171712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 20588571 - 20588649
Alignment:
Q  139 taataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||| ||||| ||||||||||||||    
T  20588571 taataagaaaagaaatgtcccttgaattcaccattttgcctctataaggggcaatttggtaatccacttattggttgag 20588649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 36743279 - 36743201
Alignment:
Q  139 taataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||||||||||||||||||| ||||||||||||||  ||||||||||| |||||| ||||||||||||||||||||    
T  36743279 taataagaaaagaaatgtcccttaaatttaccattttgtctctataaggggcaatttggtaatctacttattggttgag 36743201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 50120035 - 50119957
Alignment:
Q  139 taataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    |||||||||||| ||||||||||||||||||||||||||  |||||||||| |||||| ||||||||||||||||||||    
T  50120035 taataagaaaaggaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 50119957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 51347497 - 51347574
Alignment:
Q  139 taataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttga 216  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||| |||||| ||||||| |||||||||||    
T  51347497 taataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctatttattggttga 51347574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 3757735 - 3757813
Alignment:
Q  139 taataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    |||||||||||||||||| | ||||||||||||||||||  |||||||||| |||||| ||||||||||||||||||||    
T  3757735 taataagaaaagaaatgttcattgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 3757813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 24547340 - 24547418
Alignment:
Q  139 taataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||||| |||||| ||||||| ||||||||||||    
T  24547340 taataagaaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttggtaatctatttattggttgag 24547418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 30529349 - 30529278
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||||| ||||||||||||||||||||||  |||||||||| |||||| ||||||||||||||||||||    
T  30529349 aaaagaaatatcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 30529278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 24948357 - 24948289
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggtt 214  Q
    ||||||||||||| ||||||||||||||||||| |||||||||| ||||||  ||||||||||||||||    
T  24948357 aaaagaaatgtcctttgaatttaccattttgctcctataaggggcaatttggaaatctacttattggtt 24948289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 39406302 - 39406234
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggtt 214  Q
    ||||||||||| ||||||||||||||||| ||  ||||||||||||||||| |||||||||||||||||    
T  39406302 aaaagaaatgttccttgaatttaccatttagcccctataaggggtaatttggtaatctacttattggtt 39406234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 17730449 - 17730520
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||||||| | ||||||||||||||||||| |||||||||| |||||| ||||||||| ||||||||||    
T  17730449 aaaagaaatgtgctttgaatttaccattttgctcctataaggggcaatttggtaatctactaattggttgag 17730520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 43021901 - 43021976
Alignment:
Q  139 taataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggtt 214  Q
    |||||||||||||||||| ||||||||||||||| |||| ||||| ||| | |||||| |||||||||||||||||    
T  43021901 taataagaaaagaaatgttccttgaatttaccatcttgcctctattaggtgcaatttggtaatctacttattggtt 43021976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 29712386 - 29712454
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggtt 214  Q
    |||||||||||||||| |||||||||||||||  |||||||||| |||||| ||||||| |||||||||    
T  29712386 aaaagaaatgtcccttaaatttaccattttgcccctataaggggcaatttggtaatctatttattggtt 29712454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 8956938 - 8957000
Alignment:
Q  152 aatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggtt 214  Q
    |||||||| |||||||||||||||||  |||||||||| |||||| |||||||||||||||||    
T  8956938 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 8957000  T

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Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 8986910 - 8986972
Alignment:
Q  152 aatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggtt 214  Q
    |||||||| |||||||||||||||||  |||||||||| |||||| |||||||||||||||||    
T  8986910 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 8986972  T

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Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 37349808 - 37349870
Alignment:
Q  152 aatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggtt 214  Q
    |||||||| |||||||||||||||||  |||||||||| |||||| |||||||||||||||||    
T  37349808 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 37349870  T

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Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 53991622 - 53991554
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggtt 214  Q
    ||||||||||| || || ||||||||||||||  |||||||||| |||||| |||||||||||||||||    
T  53991622 aaaagaaatgttccatggatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 53991554  T

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Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 3821269 - 3821198
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||| ||||||||||||||||||||||||||  |||||||||| |||||| |||  |||| ||||||||||    
T  3821269 aaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 3821198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 35716369 - 35716305
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttatt 210  Q
    ||||||||||| || || ||||||||||||||  |||||||||| |||||| |||||||||||||    
T  35716369 aaaagaaatgttccatggatttaccattttgcccctataaggggcaatttggtaatctacttatt 35716305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 9888954 - 9888895
Alignment:
Q  152 aatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattg 211  Q
    |||||||| |||||||||||||||||  |||||||||  |||||| ||||||||||||||    
T  9888954 aatgtcccatgaatttaccattttgcccctataagggtcaatttggtaatctacttattg 9888895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 39716788 - 39716717
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||||||||| ||||||||||||||||||  |||| ||||| |||||| |||  || ||||||||||||    
T  39716788 aaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggttgag 39716717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 578675 - 578607
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggtt 214  Q
    |||||||||||| | |  ||||||||||||||  |||||||||  |||||| |||||||||||||||||    
T  578675 aaaagaaatgtctcattgatttaccattttgcccctataagggacaatttggtaatctacttattggtt 578607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 5752473 - 5752517
Alignment:
Q  152 aatgtcccttgaatttaccattttgcttctataaggggtaatttg 196  Q
    ||||||||||||||||||||||||||  |||||||||| ||||||    
T  5752473 aatgtcccttgaatttaccattttgcccctataaggggcaatttg 5752517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 16895994 - 16896072
Alignment:
Q  139 taataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    |||||||||||   ||||||||||||||||| |||||||   |||||||||  ||||| ||||||| | ||||||||||    
T  16895994 taataagaaaatccatgtcccttgaatttacaattttgcccttataaggggctatttggtaatctattaattggttgag 16896072  T

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Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 29530639 - 29530561
Alignment:
Q  139 taataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||||| |||||| ||||||||||||||||||||    
T  29530639 taataagaaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttggtaatctacttattggttgag 29530561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 26102228 - 26102150
Alignment:
Q  139 taataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    |||||||||||||||||||| ||||||||||||||||||  ||||||| ||||||||| |||||| |||||||||||||    
T  26102228 taataagaaaagaaatgtcctttgaatttaccattttgcccctataagaggtaatttggtaatctgcttattggttgag 26102150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 19369012 - 19368941
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    |||||||||||||||||| |||||||||||||  |||||||||| |||||| ||||||||||||||||||||    
T  19369012 aaaagaaatgtcccttgattttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 19368941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 35855213 - 35855288
Alignment:
Q  139 taataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggtt 214  Q
    ||||||||||||||||||||||| |||||||||||||||  |||||||||| |||||| ||||||| |||||||||    
T  35855213 taataagaaaagaaatgtcccttaaatttaccattttgcccctataaggggcaatttggtaatctatttattggtt 35855288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 8528181 - 8528103
Alignment:
Q  139 taataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||||||||||||||||||||||||||||||| ||   |||||||||| |||||| |||| || ||||||||||||    
T  8528181 taataagaaaagaaatgtcccttgaatttaccattctgtccctataaggggcaatttggtaatatatttattggttgag 8528103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 11955596 - 11955528
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggtt 214  Q
    |||||||||||||| || ||||||||||||||  |||||||||| |||||| |||||||||||||||||    
T  11955596 aaaagaaatgtcccatggatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 11955528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 28981895 - 28981817
Alignment:
Q  139 taataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    |||||||||||   |||||||||||||||||||||||||  |||||||||| |||||| ||||| ||| ||||||||||    
T  28981895 taataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 28981817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 40832004 - 40831926
Alignment:
Q  139 taataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    |||||||||||   |||||||||||||||||||||||||| |||||||||  |||| | ||||||||| ||||||||||    
T  40832004 taataagaaaatccatgtcccttgaatttaccattttgctcctataagggacaattcggtaatctactaattggttgag 40831926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 22473660 - 22473724
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttatt 210  Q
    ||||||||||| || || ||||||||||||||  |||||||||| |||||| |||||||||||||    
T  22473660 aaaagaaatgttccatggatttaccattttgcccctataaggggcaatttggtaatctacttatt 22473724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 18682511 - 18682555
Alignment:
Q  152 aatgtcccttgaatttaccattttgcttctataaggggtaatttg 196  Q
    ||||||||||||||||||||||||||  |||||||||| ||||||    
T  18682511 aatgtcccttgaatttaccattttgcccctataaggggcaatttg 18682555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 55297414 - 55297343
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||||||||||| |||||||||||||| |  |||||| |||||||||| |||  || | ||||||||||    
T  55297414 aaaagaaatgtccctcgaatttaccattttacccctataaagggtaatttggtaaattattaattggttgag 55297343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 8393585 - 8393629
Alignment:
Q  152 aatgtcccttgaatttaccattttgcttctataaggggtaatttg 196  Q
    ||||||| ||||||||||||||||||  |||||||||| ||||||    
T  8393585 aatgtcctttgaatttaccattttgcccctataaggggcaatttg 8393629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 108556 - 108633
Alignment:
Q  139 taataagaaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttga 216  Q
    ||||||||||||||||||||||||||||||||||||||   | ||||||||||||||| |||||||| ||||||||||    
T  108556 taataagaaaagaaatgtcccttgaatttaccattttgtccccataaggggtaatttggtaatctacgtattggttga 108633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 225451 - 225519
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggtt 214  Q
    ||||||||||||| ||||||||||||||||||  |||||||||| |||||| |||  |||| |||||||    
T  225451 aaaagaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 225519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 8371 - 8303
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggtt 214  Q
    |||||||||||||| |||||||||||||||||  |||||||||| |||||| |||||||||||||||||    
T  8371 aaaagaaatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 8303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 9591 - 9650
Alignment:
Q  152 aatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattg 211  Q
    |||||||| |||||||||||||||||  |||||||||  |||||| ||||||||||||||    
T  9591 aatgtcccatgaatttaccattttgcccctataagggtcaatttggtaatctacttattg 9650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 20650 - 20579
Alignment:
Q  146 aaaagaaatgtcccttgaatttaccattttgcttctataaggggtaatttgataatctacttattggttgag 217  Q
    ||||||||||||| ||||||||||||||||||  |||| ||||| |||||| |||  || ||||||| ||||    
T  20650 aaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggctgag 20579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0759 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0759
Description:

Target: scaffold0759; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 5956 - 5912
Alignment:
Q  152 aatgtcccttgaatttaccattttgcttctataaggggtaatttg 196  Q
    |||||||| |||||||||||||||||  |||||||||| ||||||    
T  5956 aatgtcccatgaatttaccattttgcccctataaggggcaatttg 5912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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