View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9773_low_35 (Length: 230)
Name: NF9773_low_35
Description: NF9773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9773_low_35 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 22678298 - 22678496
Alignment:
| Q |
18 |
acagcctcgggagacagacagttaccagaatcaacgccctttaaaaaccaagaagaagcatttgtttgaagttgataattgggtacaacttgagaagatt |
117 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
22678298 |
acagcctcgggagacagacagttacgagaatcaacgccctttaaaaaccaagaagaagcatttgtttgaagttgataatcgggtacaacttgagaagatt |
22678397 |
T |
|
| Q |
118 |
gtgtagtaagtgaaccattgaaattcaacaagttgttcatctcaacacttggtggtgttgtgtttctagagtaccatgtttggtttgacagaagagaga |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22678398 |
gtgtagtaagtgaaccattgaaattcaacaagttgttcatctcaacacttggtggtgttgtgtttctagagcaccatgtttggtttgacagaagagaga |
22678496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University