View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9773_low_37 (Length: 226)
Name: NF9773_low_37
Description: NF9773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9773_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 28 - 205
Target Start/End: Original strand, 49389411 - 49389588
Alignment:
| Q |
28 |
ctcagaagatcattttattttaataatcttaaaagaacaatgctgcaacacatgttagatcagtggagaagctagctcaaaattgcatgtccatacaaaa |
127 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||| |||||||||||||||| |||||||||| |
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| T |
49389411 |
ctcagaagattattttattttaataatcttaaaagaacaatgctgcaacgaatgttagatcgatcgagaagcaagctcaaaattgcatgcccatacaaaa |
49389510 |
T |
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| Q |
128 |
aatacatctc--aaaatttatcaaagctaaagtcgacgtatcagtactatattttaatatgtaggttcacaagatattca |
205 |
Q |
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|||||||||| ||||||||||||| |||||| ||| |||||||||||||||||| ||||||||| |||||||||||| |
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| T |
49389511 |
aatacatctcaaaaaatttatcaaaactaaagatgacatatcagtactatatttta--atgtaggttaacaagatattca |
49389588 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 30 - 205
Target Start/End: Original strand, 24043460 - 24043635
Alignment:
| Q |
30 |
cagaagatcattttattttaataatcttaaaagaacaatgctgcaacacatgttagatcagtggagaagctagctcaaaattgcatgtccatacaaaaaa |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||| |||||||||||||||| ||| |||||||| |
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| T |
24043460 |
cagaagatcattttattttaataatcttaaaagaacaatgctgcaacgaatgttagatcgatcgagaagcaagctcaaaattgcatgcccacacaaaaaa |
24043559 |
T |
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| Q |
130 |
tacatctc--aaaatttatcaaagctaaagtcgacgtatcagtactatattttaatatgtaggttcacaagatattca |
205 |
Q |
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| T |
24043560 |
tacatctcaaaaaatttatcaaaactaaagatgacatatcaatactatatttta--atgtaggttaacaagatattca |
24043635 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 30 - 205
Target Start/End: Original strand, 10939931 - 10940106
Alignment:
| Q |
30 |
cagaagatcattttattttaataatcttaaaagaacaatgctgcaacacatgttagatcagtggagaagctagctcaaaattgcatgtccatacaaaaaa |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||| |||||||||||||||| ||| |||||||| |
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| T |
10939931 |
cagaagatcattttattttaataatcttaaaagaacaatgctgcaacgaatgttagatcgatcgagaagcaagctcaaaattgcatgcccacacaaaaaa |
10940030 |
T |
|
| Q |
130 |
tacatctc--aaaatttatcaaagctaaagtcgacgtatcagtactatattttaatatgtaggttcacaagatattca |
205 |
Q |
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|||||||| ||||||||||||| |||||| ||| ||||| |||||||||||| ||||||||| |||||||||||| |
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| T |
10940031 |
tacatctcaaaaaatttatcaaaactaaagatgacatatcaatactatatttta--atgtaggttaacaagatattca |
10940106 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 33 - 205
Target Start/End: Original strand, 10945803 - 10945975
Alignment:
| Q |
33 |
aagatcattttattttaataatcttaaaagaacaatgctgcaacacatgttagatcagtggagaagctagctcaaaattgcatgtccatacaaaaaatac |
132 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||| |||||||||||||||| ||| ||||||||||| |
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| T |
10945803 |
aagataattttattttaataatcttaaaagaacaatgctgcaacgaatgttagatcgatcgagaagcaagctcaaaattgcatgcccacacaaaaaatac |
10945902 |
T |
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| Q |
133 |
atctc--aaaatttatcaaagctaaagtcgacgtatcagtactatattttaatatgtaggttcacaagatattca |
205 |
Q |
| |
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||||| ||||||||||||| |||||| ||| |||||||||||||||||| ||||||||| |||||||||||| |
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| T |
10945903 |
atctcaaaaaatttatcaaaactaaagatgacatatcagtactatatttta--atgtaggttaacaagatattca |
10945975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 31 - 128
Target Start/End: Complemental strand, 14656255 - 14656157
Alignment:
| Q |
31 |
agaagatcatttt-attttaataatcttaaaagaacaatgctgcaacacatgttagatcagtggagaagctagctcaaaattgcatgtccatacaaaaa |
128 |
Q |
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||||||||||||| |||||||||||||||||| ||||||| ||||| |||||||||||| || ||||| ||||||||||||| ||||||| ||||||| |
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| T |
14656255 |
agaagatcatttttattttaataatcttaaaaaaacaatgttgcaagacatgttagatccgtcaagaagatagctcaaaattgtatgtccacacaaaaa |
14656157 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 102 - 205
Target Start/End: Complemental strand, 13817308 - 13817205
Alignment:
| Q |
102 |
gctcaaaattgcatgtccatacaaaaaatacatctc--aaaatttatcaaagctaaagtcgacgtatcagtactatattttaatatgtaggttcacaaga |
199 |
Q |
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||||||||||||||| ||| |||||||||||||||| ||||||||||||| |||||| ||| ||||| |||||||||||| ||||||||| |||||| |
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| T |
13817308 |
gctcaaaattgcatgcccacacaaaaaatacatctcaaaaaatttatcaaaactaaagatgacatatcattactatatttta--atgtaggttaacaaga |
13817211 |
T |
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| Q |
200 |
tattca |
205 |
Q |
| |
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|||||| |
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| T |
13817210 |
tattca |
13817205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 13817347 - 13817306
Alignment:
| Q |
30 |
cagaagatcattttattttaataatcttaaaagaacaatgct |
71 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
13817347 |
cagaagatcattttattttaataatcttaaaagaacaatgct |
13817306 |
T |
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