View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9773_low_4 (Length: 474)
Name: NF9773_low_4
Description: NF9773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9773_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 12 - 461
Target Start/End: Original strand, 55568266 - 55568715
Alignment:
| Q |
12 |
tgtgtctgtgtcggattcaaagattgaaaatggaaatcccaaagagattcaaaggaaaggttgcgatcgtgactgcttcaacacagggaattggttttac |
111 |
Q |
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| T |
55568266 |
tgtgtctgtgtcggattcaaagattgaaaatggaaattccaaagagattcaaaggaaaggttgcgatcgtgactgcttcaacacagggaattggttttac |
55568365 |
T |
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| Q |
112 |
cattgctgagagacttggtttggaaggtgcttctgttgttatctcttctcgcagacaggtattcttccttgtcttttccgcttatttgatttcttcatag |
211 |
Q |
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| T |
55568366 |
cattgctgagagacttggtttggaaggtgcttctgttgtcatctcttctcgcagacaggtattcttccttttcttttccccttatttgatttcttcatat |
55568465 |
T |
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| Q |
212 |
ctgtctcagaaaattattatatgagaattggttagagaagagttaattgttcgaacaaattattcatgtattaatatcagaattgatcaataaccatatt |
311 |
Q |
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| T |
55568466 |
ttgtctcagaaaattattatatgagaattggttagagaagagttaattgttcgaacaaattatttatgtattaatatcagaattgatcaataaccatatt |
55568565 |
T |
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| Q |
312 |
attatttttaatctggttgaattgctgcagaaaaatgtcgatgtagctgctgaaaaacttagggccaaaggaattgatgtatttgcagttgtttgccatg |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
55568566 |
attatttttaatctggttgaattgctgcagaaaaatgttgatgtagctgctgaaaaactgagggccaaaggaattgatgtatttgcagtcgtttgccatg |
55568665 |
T |
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| Q |
412 |
tctcaaatgctctacaaaggaaggatttgattgacaaaactgtccaggtg |
461 |
Q |
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| T |
55568666 |
tctcaaatgctctacaaaggaaggatttgattgacaaaactgtccaggtg |
55568715 |
T |
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