View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9773_low_42 (Length: 210)

Name: NF9773_low_42
Description: NF9773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9773_low_42
NF9773_low_42
[»] chr3 (18 HSPs)
chr3 (1-193)||(41985657-41985852)
chr3 (1-191)||(41980883-41981073)
chr3 (9-88)||(9695616-9695695)
chr3 (2-88)||(9329866-9329952)
chr3 (1-74)||(9494822-9494895)
chr3 (5-193)||(9448347-9448535)
chr3 (1-88)||(9336569-9336656)
chr3 (5-88)||(9343878-9343961)
chr3 (1-88)||(9407395-9407482)
chr3 (10-85)||(9655360-9655435)
chr3 (16-85)||(9646367-9646436)
chr3 (13-88)||(9416614-9416689)
chr3 (1-85)||(9425602-9425686)
chr3 (16-80)||(9626488-9626552)
chr3 (40-88)||(9686751-9686799)
chr3 (1-88)||(9617463-9617550)
chr3 (16-94)||(9756424-9756502)
chr3 (15-88)||(9432939-9433012)
[»] chr8 (2 HSPs)
chr8 (28-193)||(13170579-13170744)
chr8 (5-193)||(44688680-44688868)
[»] chr1 (7 HSPs)
chr1 (1-193)||(18991233-18991422)
chr1 (9-65)||(8814385-8814441)
chr1 (9-70)||(235250-235311)
chr1 (9-70)||(251412-251473)
chr1 (9-63)||(246904-246958)
chr1 (1-83)||(4428660-4428742)
chr1 (9-65)||(231618-231674)
[»] chr2 (1 HSPs)
chr2 (1-85)||(20694304-20694388)
[»] chr6 (7 HSPs)
chr6 (10-88)||(7041534-7041612)
chr6 (8-70)||(7046875-7046937)
chr6 (9-70)||(7025793-7025854)
chr6 (9-70)||(7029850-7029911)
chr6 (9-70)||(9170854-9170915)
chr6 (9-68)||(9159515-9159574)
chr6 (9-70)||(7012857-7012918)
[»] chr7 (2 HSPs)
chr7 (13-88)||(450111-450186)
chr7 (13-75)||(3695731-3695792)
[»] chr5 (1 HSPs)
chr5 (21-74)||(18571160-18571213)


Alignment Details
Target: chr3 (Bit Score: 174; Significance: 8e-94; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 41985657 - 41985852
Alignment:
Q  1 catccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985657 catccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccat 41985756  T
Q  101 cttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaac---tcacgctcactctctaccaggaatttcatgtcccctccat 193  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||   |||| |||||||||||||||||||||||||||||||||||    
T  41985757 cttcaccggggaaaccaaaacaatgagagtcatatatgtctactagcaacaactgatcaccctcactctctaccaggaatttcatgtcccctccat 41985852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 41980883 - 41981073
Alignment:
Q  1 catccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccat 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| | |||| || ||||||||||| || |||||||    
T  41980883 catccattccccaagaacaaaactctatcccctaaactcgtcaacttgacccatttcttctctttcttagcaagcctaaacacatcaagattgaaaccat 41980982  T
Q  101 cttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctcc 191  Q
    ||||||||||||| |||| ||||||||||| ||| ||||| |||||||| || |||| |||||||||||||||||||||||  ||||||||    
T  41980983 cttcaccagggaacccaacacaatgagagtgataaatgtccactagcaataattcaccctcactctctaccaggaatttcacatcccctcc 41981073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 9695695 - 9695616
Alignment:
Q  9 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 88  Q
    |||||| |||||||| |||||||||||| | | |||||||||||| |||||||||||||||||||| ||||| |||||||    
T  9695695 ccccaaaaacaaaaccctatcccctaaattggtcaacttgacccacttcttctccttctcatcaagcctgaatacatcaa 9695616  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 9329866 - 9329952
Alignment:
Q  2 atccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 88  Q
    ||||||||||||||||||||||  |||| |||||| ||||||||||||||||  | ||||| ||||||||||| || ||||||||||    
T  9329866 atccattccccaagaacaaaaccttatctcctaaattcgccaacttgacccaccttttctctttctcatcaagcctaaacacatcaa 9329952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 9494895 - 9494822
Alignment:
Q  1 catccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaag 74  Q
    ||||||||||||||||||||||| |||||||||||||||  ||| || |||||| || ||||||||||||||||    
T  9494895 catccattccccaagaacaaaaccctatcccctaaactcatcaaattcacccatctcatctccttctcatcaag 9494822  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 5 - 193
Target Start/End: Original strand, 9448347 - 9448535
Alignment:
Q  5 cattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttc 104  Q
    ||||||||||||||||||| |||||||||||| | |  ||||| |||||||||||||||||||||| |||  | |||||||||| | ||| | ||||       
T  9448347 cattccccaagaacaaaacactatcccctaaagttgttaacttcacccatttcttctccttctcataaagcttaaacacatcaacccttatagcatcagg 9448446  T
Q  105 accagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 193  Q
    ||| |||||  | ||||||  | | ||||| ||||| ||||||||||| || | ||| || || || | |||||| |||||||||||||    
T  9448447 acccgggaactcgaaacaaaaacactcataaatgtccactagcaacaagtctccctctctatcaactaagaattttatgtcccctccat 9448535  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 9336569 - 9336656
Alignment:
Q  1 catccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 88  Q
    |||||||||||||||||||||||  |||| |||||| ||| || |||||||||  | ||||| ||||||||||| || ||||||||||    
T  9336569 catccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaa 9336656  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 9343878 - 9343961
Alignment:
Q  5 cattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 88  Q
    ||||||||||||||||||| |||||||||||| | |  ||||| ||||| ||||||||| ||||||||||  | ||||||||||    
T  9343878 cattccccaagaacaaaacactatcccctaaagttgttaacttcacccacttcttctccatctcatcaagcttaaacacatcaa 9343961  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 9407395 - 9407482
Alignment:
Q  1 catccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 88  Q
    ||||||||| | ||||||||||| |||||||||||||||  |||||| |||||| | || | |||||| |||||||| ||||||||||    
T  9407395 catccattcacaaagaacaaaaccctatcccctaaactcatcaacttcacccatcttttattcttctcgtcaagtctaaacacatcaa 9407482  T

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Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 9655435 - 9655360
Alignment:
Q  10 cccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacat 85  Q
    ||||| |||||||| |||||||||||| ||  |||||| |||||||||||||||||||||| || |||||| ||||    
T  9655435 cccaaaaacaaaaccctatcccctaaattcatcaacttcacccatttcttctccttctcatgaaatctgaaaacat 9655360  T

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Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 9646436 - 9646367
Alignment:
Q  16 aacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacat 85  Q
    |||||||| |||||||||||| ||  |||||| |||||||||||||||||||||| || |||||| ||||    
T  9646436 aacaaaaccctatcccctaaattcatcaacttcacccatttcttctccttctcatgaaatctgaaaacat 9646367  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 9416614 - 9416689
Alignment:
Q  13 aagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 88  Q
    |||||||| || |||||||||||||||| |||||| |||||||| || | |||||| ||||| | |||||||||||    
T  9416614 aagaacaacaccctatcccctaaactcgtcaacttcacccattttttattcttctcgtcaagacagaacacatcaa 9416689  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 9425602 - 9425686
Alignment:
Q  1 catccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacat 85  Q
    ||||||||| | ||||||||||| |||| || |||||||  |||||| |||||||| || | |||||| |||||||| |||||||    
T  9425602 catccattcacaaagaacaaaaccctattccttaaactcatcaacttcacccattttttattcttctcgtcaagtctaaacacat 9425686  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 9626552 - 9626488
Alignment:
Q  16 aacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaa 80  Q
    |||||||| |||||||||||| ||  ||| || |||||||||||||||||||||| || ||||||    
T  9626552 aacaaaaccctatcccctaaattcatcaaattcacccatttcttctccttctcatgaaatctgaa 9626488  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 9686751 - 9686799
Alignment:
Q  40 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 88  Q
    |||||||||||||| |||||||| ||||||||||| ||||| |||||||    
T  9686751 gccaacttgacccacttcttctcgttctcatcaagcctgaatacatcaa 9686799  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 9617550 - 9617463
Alignment:
Q  1 catccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 88  Q
    ||||||||| | | ||||||||| |||||||||||| |   |||||| |||||||||||||| ||||||| ||  |||||||| ||||    
T  9617550 catccattcacaaggaacaaaaccctatcccctaaatttttcaacttcacccatttcttctctttctcatgaaacctgaacacttcaa 9617463  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 9756424 - 9756502
Alignment:
Q  16 aacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagcttta 94  Q
    |||||||| |||||||| ||| || |||||||||||||  | ||||| ||||||||||| ||  ||||||||| |||||    
T  9756424 aacaaaaccctatcccccaaattcaccaacttgacccaccttttctctttctcatcaagcctatacacatcaatcttta 9756502  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 9432939 - 9433012
Alignment:
Q  15 gaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 88  Q
    ||||||||| ||||| |||||| ||   | ||| ||||| ||| |||||||||||||||||||||| |||||||    
T  9432939 gaacaaaaccctatctcctaaattcttgatcttcacccacttcctctccttctcatcaagtctgaaaacatcaa 9433012  T

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Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 28 - 193
Target Start/End: Complemental strand, 13170744 - 13170579
Alignment:
Q  28 tcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgag 127  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||    
T  13170744 tcccctaaactcgccaacttgacccatttcttctccttttcatcaagtctgaacacatcaagctttaaaccatattcaccagggaaaccgtaacgatgag 13170645  T
Q  128 agtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 193  Q
     |||||| ||||| |||||||||||||||| ||| ||||| |||| ||||||||||||||||||||    
T  13170644 ggtcatagatgtccactagcaacaactcaccctcgctctcgaccaagaatttcatgtcccctccat 13170579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 5 - 193
Target Start/End: Complemental strand, 44688868 - 44688680
Alignment:
Q  5 cattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttc 104  Q
    |||||||||||||||||| ||||| |||||||||||  ||||| ||||||||||| | ||||||||  ||  ||||||||||||||  || |||||||||    
T  44688868 cattccccaagaacaaaattctattccctaaactcgttaactttacccatttcttatgcttctcattgagcgtgaacacatcaagccgtagaccatcttc 44688769  T
Q  105 accagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 193  Q
    ||| ||||| ||||||| |||||||||||| ||||| ||||||||||||||||  |||||||||||||||||||| |||||||||||||    
T  44688768 acccgggaacccaaaaccatgagagtcatagatgtccactagcaacaactcaccttcactctctaccaggaattttatgtcccctccat 44688680  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 18991233 - 18991422
Alignment:
Q  1 catccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccat 100  Q
    ||||||||||||||||||||||| |||| |||||| |||  | || |   ||||| |||||   |||||| ||| || ||||| |  || |||| ||| |    
T  18991233 catccattccccaagaacaaaaccctattccctaagctcttcgacct---ccattccttctttctctcattaagcctaaacaccttcagttttagacctt 18991329  T
Q  101 cttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 193  Q
     ||| |||||||| ||||||||||| |||||| | ||||| ||||||||||||||||  |||| |||||||| ||||||||| ||||||||||    
T  18991330 tttcgccagggaacccaaaacaatgcgagtcacagatgtccactagcaacaactcaccttcacactctaccaagaatttcatatcccctccat 18991422  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 8814441 - 8814385
Alignment:
Q  9 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctt 65  Q
    |||||| ||||||||||||||||||||| |||||||||| ||||| |||||||||||    
T  8814441 ccccaaaaacaaaactctatcccctaaattcgccaacttcacccacttcttctcctt 8814385  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 235250 - 235311
Alignment:
Q  9 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 70  Q
    ||||||||| |||||||||||||||||| | |||||||| ||||| ||||||||||| ||||    
T  235250 ccccaagaagaaaactctatcccctaaatttgccaacttcacccacttcttctccttttcat 235311  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 251473 - 251412
Alignment:
Q  9 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 70  Q
    |||||||||||||||||||||||||| | |||||||||| ||||| ||||| ||||| ||||    
T  251473 ccccaagaacaaaactctatcccctatattcgccaactttacccacttcttttccttttcat 251412  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 246904 - 246958
Alignment:
Q  9 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcc 63  Q
    |||||||||||||||| |||| |||||| | |||||||| |||||||||||||||    
T  246904 ccccaagaacaaaactgtatctcctaaattagccaacttcacccatttcttctcc 246958  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 4428660 - 4428742
Alignment:
Q  1 catccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacac 83  Q
    |||||||||||||| |||||||| |||||||| ||||||| ||| || ||||||||   | ||||||||||||| || |||||    
T  4428660 catccattccccaaaaacaaaaccctatcccccaaactcgtcaatttcacccatttacgcgccttctcatcaagcctaaacac 4428742  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 231618 - 231674
Alignment:
Q  9 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctt 65  Q
    |||||||||||||||| ||||||||||| | |||||||| ||||| ||| |||||||    
T  231618 ccccaagaacaaaactatatcccctaaattagccaacttcacccacttcatctcctt 231674  T

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Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 20694388 - 20694304
Alignment:
Q  1 catccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacat 85  Q
    |||||||||||||| |||||||| |||||||| ||||| | |||  | ||||||||||||||||| |||||||| ||||||||||    
T  20694388 catccattccccaaaaacaaaaccctatcccccaaacttgtcaaactcacccatttcttctccttttcatcaagcctgaacacat 20694304  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 7041534 - 7041612
Alignment:
Q  10 cccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 88  Q
    |||||||||||||| |||||||||||||| | |||||| ||||| |||||||||||||||| |||| | |||| |||||    
T  7041534 cccaagaacaaaaccctatcccctaaactagtcaacttcacccacttcttctccttctcattaagtttaaacaaatcaa 7041612  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 7046875 - 7046937
Alignment:
Q  8 tccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 70  Q
    ||||||||||||||||| |||||||||||||||  ||||| ||||| ||||||||||||||||    
T  7046875 tccccaagaacaaaactttatcccctaaactcgttaacttcacccacttcttctccttctcat 7046937  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 7025793 - 7025854
Alignment:
Q  9 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 70  Q
    ||||||||||||||| ||||| |||||||||| |||||| ||||| ||||||||||||||||    
T  7025793 ccccaagaacaaaaccctatctcctaaactcgtcaacttcacccacttcttctccttctcat 7025854  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 7029850 - 7029911
Alignment:
Q  9 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 70  Q
    ||||||||||||||| |||||||| ||||||| |||||| ||||| ||||||||||||||||    
T  7029850 ccccaagaacaaaaccctatccccgaaactcgtcaacttcacccacttcttctccttctcat 7029911  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 9170854 - 9170915
Alignment:
Q  9 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 70  Q
    ||||||||||||||| ||||||||||||||||  || || ||||| ||||||||||||||||    
T  9170854 ccccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcat 9170915  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 9159574 - 9159515
Alignment:
Q  9 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctc 68  Q
    ||||||||||||||| ||||||||||||||||  || || ||||| ||||||||||||||    
T  9159574 ccccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctc 9159515  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 7012857 - 7012918
Alignment:
Q  9 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 70  Q
    ||||||||||||||  ||||| |||||||| | |||||| ||||| ||||||||||||||||    
T  7012857 ccccaagaacaaaatcctatctcctaaacttgtcaacttcacccacttcttctccttctcat 7012918  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 450186 - 450111
Alignment:
Q  13 aagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 88  Q
    |||||||||| | |||| |||||| ||  |||||||||||| || ||||||||||||||||| || ||||||||||    
T  450186 aagaacaaaattgtatctcctaaattcctcaacttgacccactttttctccttctcatcaagcctaaacacatcaa 450111  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 3695731 - 3695792
Alignment:
Q  13 aagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagt 75  Q
    |||||||||||||||||||||||||||  ||||||||  || ||||||| |||||||| ||||    
T  3695731 aagaacaaaactctatcccctaaactctacaacttga-tcacttcttcttcttctcattaagt 3695792  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 18571160 - 18571213
Alignment:
Q  21 aactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaag 74  Q
    |||| ||||||||||||||| ||| || ||||| ||||||||||||||||||||    
T  18571160 aactgtatcccctaaactcgtcaatttcacccacttcttctccttctcatcaag 18571213  T

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