View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9773_low_5 (Length: 419)
Name: NF9773_low_5
Description: NF9773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9773_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 14 - 405
Target Start/End: Original strand, 13176713 - 13177101
Alignment:
| Q |
14 |
aggagggactagtatatggggaaagaaatttaacgacgagataagagaatcgttgaaggtcagtacatccgccatgagggaaaaacatactgtttagatt |
113 |
Q |
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| T |
13176713 |
aggagggactagtatatggggaaagaaatttaacgacgagataagagaatctttgaaggtcagtacatccgccataagggaaaaacatactgtttagatt |
13176812 |
T |
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| Q |
114 |
tttctgtttgatgcattttataaa-caaacgaaataggacatagaattgacgaagtatatgcggttttatctactgaaattgatggatggaagggaatga |
212 |
Q |
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| T |
13176813 |
tttgtgtttgatgcattttataaaacaaacgaaataggacatagaattgacgaagtatatgcggtt----ctactgaaattgatggatggaagggaatga |
13176908 |
T |
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| Q |
213 |
gattttatcatatttaagggaatataaattttgcgataacctagtgggtttttcatactcattggcattcgaaaaatgtcattccaagttccgacgctta |
312 |
Q |
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| T |
13176909 |
gattttatcatatttaagggaatataaattttgcgataacctagtgggtttttcatactcattggcattcgaaatatgtcattccaagttccgacgctta |
13177008 |
T |
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| Q |
313 |
agtatttggttaaatgtcaatcgtactgtaaatgaaatctaattatcttaccgtagttatatttaaatgtcatattgtgattatatttggttt |
405 |
Q |
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| T |
13177009 |
agtatttggttaaaggtcaatcgtactgtaaatgaaatctaattatcttacggtagttatatttaaatatcatattgtgattatatttggttt |
13177101 |
T |
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