View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9773_low_6 (Length: 412)

Name: NF9773_low_6
Description: NF9773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9773_low_6
NF9773_low_6
[»] chr3 (15 HSPs)
chr3 (19-367)||(16011415-16011763)
chr3 (298-406)||(9695607-9695715)
chr3 (192-406)||(9756397-9756611)
chr3 (325-406)||(9655375-9655456)
chr3 (325-406)||(9646382-9646463)
chr3 (307-410)||(41985641-41985744)
chr3 (299-384)||(9395298-9395383)
chr3 (299-410)||(9329849-9329960)
chr3 (299-410)||(9336553-9336664)
chr3 (301-410)||(9343858-9343967)
chr3 (301-410)||(9448327-9448436)
chr3 (325-382)||(9626498-9626555)
chr3 (310-410)||(9494811-9494911)
chr3 (307-395)||(13864232-13864320)
chr3 (307-410)||(41980867-41980970)
[»] chr6 (5 HSPs)
chr6 (325-410)||(7041509-7041594)
chr6 (299-386)||(9170854-9170941)
chr6 (299-386)||(7025793-7025880)
chr6 (299-386)||(7029850-7029937)
chr6 (299-386)||(9159487-9159574)
[»] chr2 (1 HSPs)
chr2 (301-410)||(20694295-20694404)
[»] chr1 (3 HSPs)
chr1 (330-386)||(8814385-8814441)
chr1 (299-386)||(231618-231705)
chr1 (366-410)||(4439873-4439917)
[»] chr5 (1 HSPs)
chr5 (300-369)||(18571165-18571234)


Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 367
Target Start/End: Original strand, 16011415 - 16011763
Alignment:
Q  19 gcgagtactctggtgagccgatgattttccatcgcggagatgatcactggacaaatatccccgatgtcccaaatgtggaaaagtcgcatggagatatttt 118  Q
    ||||||||||||||||||  || ||||||| | |||| |||||||| ||||||||||| ||||||||||||||||||||||| || |||||||||||||     
T  16011415 gcgagtactctggtgagctaattattttccgttgcggggatgatcattggacaaatatgcccgatgtcccaaatgtggaaaaatcacatggagatatttg 16011514  T
Q  119 caattttaaagggaggccttgtgtaatagatcgaaccggtcagactgtgatgatcgaatcagacttgactgctcatttggtggctgaaccttgttttggt 218  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  16011515 caattttaaagggaggccttgtgtaatagatagaaccggtcggactatgatgatcgaatcagacttgactgttcatttggcggctgaaccttgttttggt 16011614  T
Q  219 ggcgatactaaattcttggtagagagtaagtgtcagctgttgcttgtggatagatacgaaagtgatggtagtagtggtaatgtaaggattgatgtgtttg 318  Q
    |||||||||||||||||||||||||||||||||| | |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16011615 ggcgatactaaattcttggtagagagtaagtgtcggttgttgcatgtggatagatatgaaagtgatggtagtagtggtaatgtaaggattgatgtgtttg 16011714  T
Q  319 ggctcgatgagaaggagaagaattgggttaaattgcctaatttagggga 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16011715 ggctcgatgagaaggagaagaattgggttaaattgcctaatttagggga 16011763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 298 - 406
Target Start/End: Original strand, 9695607 - 9695715
Alignment:
Q  298 atgtaaggattgatgtgtttgggctcgatgagaaggagaagaattgggttaaattgcctaatttaggggatagggttttgtttttgggggaaggttgttc 397  Q
    ||||||| |||||||| ||  |||| ||||||||||||||||| ||||| || ||| | ||||||||||||||||||||||||||||||||||  |||||    
T  9695607 atgtaagtattgatgtattcaggcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggatagggttttgtttttgggggaagactgttc 9695706  T
Q  398 gttctctgc 406  Q
    |||||||||    
T  9695707 gttctctgc 9695715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 192 - 406
Target Start/End: Complemental strand, 9756611 - 9756397
Alignment:
Q  192 catttggtggctgaaccttgttttggtggcgatactaaattcttggtagagagtaagtgtcagctgttgcttgtggatagatacgaaagtgatggtagta 291  Q
    |||||||||||||| || |   ||||||||||   |||||||||||| |||||| | ||| || ||||||| |||||||||||   |||| |||||        
T  9756611 catttggtggctgagccgttcattggtggcgacgttaaattcttggtggagagtgaatgtgagttgttgctagtggatagatatttaagtaatggtgacg 9756512  T
Q  292 gtggtaatgtaaggattgatgtgtttgggctcgatgagaaggagaagaattgggttaaattgcctaatttaggggatagggttttgtttttgggggaagg 391  Q
     || | |||||| ||||||||||| | |||| |||||||| ||||| |  ||||| || |||   ||||| |||||||||||||||||||| ||||||||    
T  9756511 atgatgatgtaaagattgatgtgtataggcttgatgagaaagagaaaaggtgggtcaagttggtgaatttgggggatagggttttgtttttcggggaagg 9756412  T
Q  392 ttgttcgttctctgc 406  Q
     ||||| ||||||||    
T  9756411 ctgttcattctctgc 9756397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 325 - 406
Target Start/End: Original strand, 9655375 - 9655456
Alignment:
Q  325 atgagaaggagaagaattgggttaaattgcctaatttaggggatagggttttgtttttgggggaaggttgttcgttctctgc 406  Q
    |||||||||||||||| ||||| || |||   ||||||||||||||||||||||||||||| ||||| |||||||| |||||    
T  9655375 atgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgtttttgggcgaaggatgttcgttttctgc 9655456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 406
Target Start/End: Original strand, 9646382 - 9646463
Alignment:
Q  325 atgagaaggagaagaattgggttaaattgcctaatttaggggatagggttttgtttttgggggaaggttgttcgttctctgc 406  Q
    |||||||||||||||| ||||| || |||   |||||||||||||||||||||||||| || ||||| |||||||| |||||    
T  9646382 atgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgttttttggcgaaggatgttcgttttctgc 9646463  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 410
Target Start/End: Complemental strand, 41985744 - 41985641
Alignment:
Q  307 ttgatgtgtttgggctcgatgagaaggagaagaattgggttaaattgcctaatttaggggatagggttttgtttttgggggaaggttgttcgttctctgc 406  Q
    ||||||||||  | || ||||||||||||||||| ||||| || ||| | | |||||||||||| |||||||| |||||| | || |||||||| |||||    
T  41985744 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 41985645  T
Q  407 ttct 410  Q
    ||||    
T  41985644 ttct 41985641  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 384
Target Start/End: Complemental strand, 9395383 - 9395298
Alignment:
Q  299 tgtaaggattgatgtgtttgggctcgatgagaaggagaagaattgggttaaattgcctaatttaggggatagggttttgtttttgg 384  Q
    ||||||||||||||||||| |||| ||||||||| |||| || ||||| || ||| |||||||||| |||  ||||||||| ||||    
T  9395383 tgtaaggattgatgtgtttaggcttgatgagaagcagaaaaagtgggtgaagttgactaatttaggagatttggttttgttcttgg 9395298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 410
Target Start/End: Complemental strand, 9329960 - 9329849
Alignment:
Q  299 tgtaaggattgatgtgtttgggctcgatgagaaggagaagaattgggttaaattgcctaatttaggggatagggttttgtttttgggggaaggttgttcg 398  Q
    |||| |||||||||||||| |||| |||||||| ||||| |  ||||| || ||| | |||||||| |||| ||||||||| |||||| | || | ||||    
T  9329960 tgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagttggcgaatttaggagataaggttttgttcttggggaatggatattcg 9329861  T
Q  399 ttctctgcttct 410  Q
    || |||||||||    
T  9329860 ttttctgcttct 9329849  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 410
Target Start/End: Complemental strand, 9336664 - 9336553
Alignment:
Q  299 tgtaaggattgatgtgtttgggctcgatgagaaggagaagaattgggttaaattgcctaatttaggggatagggttttgtttttgggggaaggttgttcg 398  Q
    |||| |||||||||||||| |||| |||||||| ||||| |  ||||| ||  || | |||||||| |||| ||||||||| |||||| | || ||||||    
T  9336664 tgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcg 9336565  T
Q  399 ttctctgcttct 410  Q
    || |||||||||    
T  9336564 ttttctgcttct 9336553  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 410
Target Start/End: Complemental strand, 9343967 - 9343858
Alignment:
Q  301 taaggattgatgtgtttgggctcgatgagaaggagaagaattgggttaaattgcctaatttaggggatagggttttgtttttgggggaaggttgttcgtt 400  Q
    ||||| |||||||||||  ||| ||||||| ||||||||| ||||| || ||  | | |||||||||||| |||||||| |||||| | |  ||||||||    
T  9343967 taagggttgatgtgtttaagcttgatgagatggagaagaagtgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgaatgttcgtt 9343868  T
Q  401 ctctgcttct 410  Q
     |||||||||    
T  9343867 ttctgcttct 9343858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 410
Target Start/End: Complemental strand, 9448436 - 9448327
Alignment:
Q  301 taaggattgatgtgtttgggctcgatgagaaggagaagaattgggttaaattgcctaatttaggggatagggttttgtttttgggggaaggttgttcgtt 400  Q
    ||||| |||||||||||  |||  |||||||||||||||| ||||| || ||  | | |||||||||||| |||||||| |||||| | |  ||||||||    
T  9448436 taagggttgatgtgtttaagctttatgagaaggagaagaaatgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgactgttcgtt 9448337  T
Q  401 ctctgcttct 410  Q
     |||||||||    
T  9448336 ttctgcttct 9448327  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 382
Target Start/End: Original strand, 9626498 - 9626555
Alignment:
Q  325 atgagaaggagaagaattgggttaaattgcctaatttaggggatagggttttgttttt 382  Q
    |||||||||||||||| ||||| || |||   ||||||||||||||||||||||||||    
T  9626498 atgagaaggagaagaaatgggtgaatttgatgaatttaggggatagggttttgttttt 9626555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 410
Target Start/End: Original strand, 9494811 - 9494911
Alignment:
Q  310 atgtgtttgggctcgatgagaaggagaagaattgggttaaattgcctaatttaggggatagggttttgtttttgggggaaggttgttcgttctctgcttc 409  Q
    ||||| || |||| ||||||||||||| ||  ||||| || |||   | ||||||||||||||||||||| |||||| | || |||||||| ||||||||    
T  9494811 atgtgcttaggcttgatgagaaggagatgagatgggtgaatttgatgagtttaggggatagggttttgttcttggggaatggatgttcgttttctgcttc 9494910  T
Q  410 t 410  Q
    |    
T  9494911 t 9494911  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 395
Target Start/End: Complemental strand, 13864320 - 13864232
Alignment:
Q  307 ttgatgtgtttgggctcgatgagaaggagaagaattgggttaaattgcctaatttaggggatagggttttgtttttgggggaaggttgt 395  Q
    ||||||||||| |||| ||||||| |||||| || |||||  |  ||   ||||| |||||||||||||||||||||||||||| ||||    
T  13864320 ttgatgtgtttaggcttgatgagagggagaaaaagtgggtggaggtgagaaatttgggggatagggttttgtttttgggggaagattgt 13864232  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 410
Target Start/End: Complemental strand, 41980970 - 41980867
Alignment:
Q  307 ttgatgtgtttgggctcgatgagaaggagaagaattgggttaaattgcctaatttaggggatagggttttgtttttgggggaaggttgttcgttctctgc 406  Q
    ||||||||||| |||| | | |||| |||||||| ||||| || ||| | | |||||||||||| |||||||| |||||| | || |||||||| | |||    
T  41980970 ttgatgtgtttaggcttgctaagaaagagaagaaatgggtcaagttgacgagtttaggggatagagttttgttcttggggaatggatgttcgttttttgc 41980871  T
Q  407 ttct 410  Q
    ||||    
T  41980870 ttct 41980867  T

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Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 325 - 410
Target Start/End: Complemental strand, 7041594 - 7041509
Alignment:
Q  325 atgagaaggagaagaattgggttaaattgcctaatttaggggatagggttttgtttttgggggaaggttgttcgttctctgcttct 410  Q
    |||||||||||||||| ||||| || ||| ||| ||||||||||||||||||||| ||||| ||||  ||||||||||||| ||||    
T  7041594 atgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgtttct 7041509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 386
Target Start/End: Complemental strand, 9170941 - 9170854
Alignment:
Q  299 tgtaaggattgatgtgtttgggctcgatgagaaggagaagaattgggttaaattgcctaatttaggggatagggttttgtttttgggg 386  Q
    ||||||||||||| |||||  |||  |||||||||||||||| ||||| |||||  | | ||||||||||||||||||||| ||||||    
T  9170941 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 9170854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 386
Target Start/End: Complemental strand, 7025880 - 7025793
Alignment:
Q  299 tgtaaggattgatgtgtttgggctcgatgagaaggagaagaattgggttaaattgcctaatttaggggatagggttttgtttttgggg 386  Q
    ||||||||||||| |||||  |||  |||||||||||||||| ||||| || ||| | | |||||| |||||||||||||| ||||||    
T  7025880 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttcttgggg 7025793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 386
Target Start/End: Complemental strand, 7029937 - 7029850
Alignment:
Q  299 tgtaaggattgatgtgtttgggctcgatgagaaggagaagaattgggttaaattgcctaatttaggggatagggttttgtttttgggg 386  Q
    ||||||||||||| |||||  |||  |||||||||||||||| ||||| || ||| | | ||| ||||||||||||||||| ||||||    
T  7029937 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttcggggatagggttttgttcttgggg 7029850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 386
Target Start/End: Original strand, 9159487 - 9159574
Alignment:
Q  299 tgtaaggattgatgtgtttgggctcgatgagaaggagaagaattgggttaaattgcctaatttaggggatagggttttgtttttgggg 386  Q
    ||||||||||||| |||||  |||  | |||||||||||||| ||||| |||||  | | ||||||||||||||||||||| ||||||    
T  9159487 tgtaaggattgatttgtttaagcttaacgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 9159574  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 410
Target Start/End: Original strand, 20694295 - 20694404
Alignment:
Q  301 taaggattgatgtgtttgggctcgatgagaaggagaagaattgggttaaattgcctaatttaggggatagggttttgtttttgggggaaggttgttcgtt 400  Q
    |||| ||| |||||||  |||| ||||| ||||||||||| ||||| |  ||| | | ||| |||||||||||||||||||||||| | || ||||||||    
T  20694295 taagaatttatgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgtt 20694394  T
Q  401 ctctgcttct 410  Q
     |||||||||    
T  20694395 ttctgcttct 20694404  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 386
Target Start/End: Original strand, 8814385 - 8814441
Alignment:
Q  330 aaggagaagaattgggttaaattgcctaatttaggggatagggttttgtttttgggg 386  Q
    ||||||||||| ||||| || ||| | |||||||||||||| |||||||||||||||    
T  8814385 aaggagaagaagtgggtgaagttggcgaatttaggggatagagttttgtttttgggg 8814441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 386
Target Start/End: Complemental strand, 231705 - 231618
Alignment:
Q  299 tgtaaggattgatgtgtttgggctcgatgagaaggagaagaattgggttaaattgcctaatttaggggatagggttttgtttttgggg 386  Q
    ||||||||| |||||||||  |||| |||  ||||||| ||| ||||| || ||| |||||||||||||||  |||||||| ||||||    
T  231705 tgtaaggatagatgtgtttaagctcaatgcaaaggagatgaagtgggtgaagttggctaatttaggggatatagttttgttcttgggg 231618  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 410
Target Start/End: Complemental strand, 4439917 - 4439873
Alignment:
Q  366 gatagggttttgtttttgggggaaggttgttcgttctctgcttct 410  Q
    ||||||||||||||||||||| | || |||||||| |||||||||    
T  4439917 gatagggttttgtttttggggaatggatgttcgttttctgcttct 4439873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 369
Target Start/End: Complemental strand, 18571234 - 18571165
Alignment:
Q  300 gtaaggattgatgtgtttgggctcgatgagaaggagaagaattgggttaaattgcctaatttaggggata 369  Q
    |||||||||||| | |||  ||| ||||||||||||||||| ||||| |||||| | | |||||||||||    
T  18571234 gtaaggattgatttctttaagcttgatgagaaggagaagaagtgggtgaaattgacgagtttaggggata 18571165  T

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