View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9773_low_8 (Length: 365)
Name: NF9773_low_8
Description: NF9773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9773_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 9573269 - 9573473
Alignment:
| Q |
17 |
aagtagtttagtacatttttctttaaatgtttatgcagaagacatttaagagatatactattaatgaaatgcatatttttcttttaattaatggattcat |
116 |
Q |
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| T |
9573269 |
aagtagtttagtacatttttctttaaatgtttatgcagaagacatttaagagatatactattaatgaaatacatatttttcttttaattaatggattcat |
9573368 |
T |
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| Q |
117 |
aatatataatctcttaactcattggtgagtgataaatatatatannnnnnnagaaaacgtaagaaggataaatgtgaaagttaaaaaattaggatgaccc |
216 |
Q |
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| T |
9573369 |
aatatataatcttttaactcattggtgagtgataaatatatatatttttttagaaaacgtaagaaggataaatgtgaaagttaaaaaattaggatgtccc |
9573468 |
T |
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| Q |
217 |
ccctc |
221 |
Q |
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||||| |
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| T |
9573469 |
ccctc |
9573473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 9573592 - 9573629
Alignment:
| Q |
326 |
taccctaaaagaaattttgtacaaaactctttcctttg |
363 |
Q |
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| T |
9573592 |
taccctaaaagaaattttgtacaaaactctttcttttg |
9573629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 9578046 - 9578107
Alignment:
| Q |
89 |
atatttttcttttaattaatggattcataatatataatctcttaactcattggtgagtgata |
150 |
Q |
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| T |
9578046 |
atatttttctttaaattaattgattcataaaagataatcttttaactaattggttagtgata |
9578107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 327
Target Start/End: Original strand, 9573534 - 9573580
Alignment:
| Q |
282 |
gtttgttttgttaaataggacattgctaa-caaattagttttaaata |
327 |
Q |
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| T |
9573534 |
gtttgttttgttaaatatgacattgctaatcaaattagttgtaaata |
9573580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 157
Target Start/End: Original strand, 9582567 - 9582641
Alignment:
| Q |
83 |
aaatgcatatttttcttttaattaatggattcataatatataatctcttaactcattggtgagtgataaatatat |
157 |
Q |
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| T |
9582567 |
aaatacatatttttctttgaattagttgattcataaaagataatcttttaactaatttgtcaatgataaatatat |
9582641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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