View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9774_low_1 (Length: 614)
Name: NF9774_low_1
Description: NF9774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9774_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 23522549 - 23522280
Alignment:
| Q |
1 |
agtgagttttgaagtgaagaagtggtgaaagaggaagatgaatggagaaggtgtggtgggacctataaaacagagaggggaaggaaaaggtggggactct |
100 |
Q |
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| T |
23522549 |
agtgagttttgaagtgaagaagtggtgaaagaggaagatgaatggagaaggtgtggtgggacctataaaacagagaggggaaggaaaaggtggggactct |
23522450 |
T |
|
| Q |
101 |
tacattacatctatggatggacaattgggtctgatccatctcagagtgaattgcctgacaatcgccacaagactgcctttgccttctcaaagtaccacct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23522449 |
tacattacatctatggatggacaattgggtctgatccatctcagagtgaattgcctgacaatcgccacaagactgcctttgccttctcaaagtaccacct |
23522350 |
T |
|
| Q |
201 |
ccctttcacttatttttggatccattcattcacatccatttctataaactcaatagtagtatatacccac |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23522349 |
ccctttcacttatttttggatccattcattcacatccatttctataaactctatagtagtatatacccac |
23522280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 295 - 603
Target Start/End: Complemental strand, 5192777 - 5192465
Alignment:
| Q |
295 |
aagtgtccaatagagagagatgtcttgtatttttggaaaaataagtattgg---tagtctcattttgttgttaatgtttgtctttgaggatattatcttg |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5192777 |
aagtgtccaatagagagagatgtcttgtatttttggaaaaataagtattggcggtagtctcattttgttgttaatgtttgtctttgagg-tattatcttg |
5192679 |
T |
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| Q |
392 |
ttttagacctttatat--gtctttgtcattcttttgagttttgaaatcaaagccattgaatccctaatatccatacctacattttttatgaagacatcta |
489 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5192678 |
ttttagacctttatatatgtctttgtcattcttttgagttttgaaatcaaagccattgaatccctaaaatccatacctacattttttatgaagacatcta |
5192579 |
T |
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| Q |
490 |
tatataaccttgacgttaacttatatgattctacgcgatctcgttgtggtgtgacgagcttgcctaggtatattttttctagcttacgcatgagacacaa |
589 |
Q |
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|| ||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
5192578 |
tacataaccttgacgttaacttgtgtgattctaggcgatctcgttgtggtgtgacgagcttgcctaggtatattttttttagattacgcatgagacacaa |
5192479 |
T |
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| Q |
590 |
cgactggcctatgc |
603 |
Q |
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|||||||||||||| |
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| T |
5192478 |
cgactggcctatgc |
5192465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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