View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9774_low_10 (Length: 253)
Name: NF9774_low_10
Description: NF9774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9774_low_10 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 15814463 - 15814697
Alignment:
| Q |
18 |
agaggttgatagatgtttggaaagtctaccaaattgggtcaataaatgataattattttttgaaggaaataaatgataaaatttgtctccatagagattg |
117 |
Q |
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| T |
15814463 |
agaggttgatagatgtttggaaagtctaccaaattgggtcaataaatgataatt-ttttttgaaggtaataaatgataaaatttgtctccatagagattg |
15814561 |
T |
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| Q |
118 |
tgatcaatcaacaaactcatcaataagaacggaagtatccttaacagcaataagaacggaagtatcatggataactctatagttgcaaagattcgccgtc |
217 |
Q |
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| T |
15814562 |
tgatcaatcaataaacccatcaataagaacggaagtatccttaacagcaataagaacggaagtatcatggataactctatagttgcaaagattcgacgtc |
15814661 |
T |
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| Q |
218 |
ttcttcagatggattgtgaggtggtggtgcgtcact |
253 |
Q |
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| T |
15814662 |
ttcttcagatggattgtgaggtggtagtgcgtcact |
15814697 |
T |
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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 141
Target Start/End: Original strand, 16072354 - 16072399
Alignment:
| Q |
96 |
aaatttgtctccatagagattgtgatcaatcaacaaactcatcaat |
141 |
Q |
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| T |
16072354 |
aaatttgtctccatagagattgtgatcaatcgataaaatcatcaat |
16072399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 141
Target Start/End: Original strand, 16086007 - 16086052
Alignment:
| Q |
96 |
aaatttgtctccatagagattgtgatcaatcaacaaactcatcaat |
141 |
Q |
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| T |
16086007 |
aaatttgtctctatagagattgtgatcaattgataaactcatcaat |
16086052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 20378360 - 20378433
Alignment:
| Q |
160 |
aacagcaataagaacggaagtatcatggataactctatagttgcaaagattcgccgtcttcttcagatggattg |
233 |
Q |
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| T |
20378360 |
aacagtaataagaatggaagtattatgagtatatctttagttgcaaagattcgtcgtttccttcagatggattg |
20378433 |
T |
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