View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9774_low_14 (Length: 201)
Name: NF9774_low_14
Description: NF9774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9774_low_14 |
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| [»] chr2 (4 HSPs) |
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| [»] chr4 (5 HSPs) |
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| [»] scaffold1463 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0368 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 7390424 - 7390624
Alignment:
| Q |
1 |
ttgaattatagtttttcattgattttgtgtaaattatcattgattatcaattacaatatagccaaaatggtttgattatcaattttgtgtaaattttgct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7390424 |
ttgaattatagtttttcattgattttgtgtaaattatcattgattatcaattacagtatagccaaaatggtttgattatcaattttgtgtaaattttgct |
7390523 |
T |
|
| Q |
101 |
aattttgaatttgacattagggtgtgaattttgtgtaaattatagttgattttgatatgtgattgtgtgaattacagctttttcttcattgttagaatag |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7390524 |
aattttgaatttgacattagggtgtgaattttgtgtaaattatagttgattttgatatgtgattgtgtgaattacagctttttcttcattgttagaatag |
7390623 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
7390624 |
t |
7390624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 19586688 - 19586488
Alignment:
| Q |
1 |
ttgaattatagtttttcattgattttgtgtaaattatcattgattatcaattacaatatagccaaaatggtttgattatcaattttgtgtaaattttgct |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19586688 |
ttgaattatagtttttcattgattttgtgtaaattatcattgattatcaattacagtatagccaaaatggtttgattatcaattttgtgtaaattttgct |
19586589 |
T |
|
| Q |
101 |
aattttgaatttgacattagggtgtgaattttgtgtaaattatagttgattttgatatgtgattgtgtgaattacagctttttcttcattgttagaatag |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
19586588 |
aattttgaatttgacattagggtgtgaattttgtgtaaattatagttgattttgatatgtgattgtgtgaattacaactttttcttcattgttagaatag |
19586489 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
19586488 |
t |
19586488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 7390385 - 7390430
Alignment:
| Q |
85 |
ttgtgtaaattttgctaattttgaatttgacattagggtgtgaatt |
130 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
7390385 |
ttgtgtgaattttgctaattttgaatttgacattagggtttgaatt |
7390430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 19586727 - 19586682
Alignment:
| Q |
85 |
ttgtgtaaattttgctaattttgaatttgacattagggtgtgaatt |
130 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
19586727 |
ttgtgtgaattttgctaattttgaatttgacattagggtttgaatt |
19586682 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 66 - 201
Target Start/End: Complemental strand, 11658354 - 11658219
Alignment:
| Q |
66 |
aatggtttgattatcaattttgtgtaaattttgctaattttgaatttgacattagggtgtgaattttgtgtaaattatagttgattttgatatgtgattg |
165 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11658354 |
aatggtttgattatcaattttgtgtaaattttgctaattttgaatttgacattagggtgtgaattttgtgtaaattatagttgattttgatatgtgattg |
11658255 |
T |
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| Q |
166 |
tgtgaattacagctttttcttcattgttagaatagt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
11658254 |
tgtgaattacagctttttcttcattgttagaatagt |
11658219 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 40 - 157
Target Start/End: Complemental strand, 11658471 - 11658354
Alignment:
| Q |
40 |
ttgattatcaattacaatatagccaaaatggtttgattatcaattttgtgtaaattttgctaattttgaatttgacattagggtgtgaattttgtgtaaa |
139 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11658471 |
ttgattatcaattacagtatagccaaaatggtttgattatcaattttgtgtaaattttgctaattttgaatttgacattagggtgtgaattttgtgtaaa |
11658372 |
T |
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| Q |
140 |
ttatagttgattttgata |
157 |
Q |
| |
|
|||||||||||||||||| |
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| T |
11658371 |
ttatagttgattttgata |
11658354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 91 - 201
Target Start/End: Complemental strand, 50234582 - 50234472
Alignment:
| Q |
91 |
aaattttgctaattttgaatttgacattagggtgtgaattttgtgtaaattatagttgattttgatatgtgattgtgtgaattacagctttttcttcatt |
190 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
50234582 |
aaattttgctaatttcgaatttgacattagggtatgaatattgtgtaaattatagttgattttgatatgtgattgtgtgaattacaactttttcttcatt |
50234483 |
T |
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| Q |
191 |
gttagaatagt |
201 |
Q |
| |
|
||||||||||| |
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|
| T |
50234482 |
gttagaatagt |
50234472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 11658542 - 11658459
Alignment:
| Q |
1 |
ttgaattatagtttttcattgattttgtgtaaattatcattgattatcaattacaatatagccaaaatggtttgattatcaatt |
84 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
11658542 |
ttgaattatagtttttcattgattttgtgtaaattatcattgattatcaattacagtatagccaaaatggtttgattatcaatt |
11658459 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 11658581 - 11658536
Alignment:
| Q |
85 |
ttgtgtaaattttgctaattttgaatttgacattagggtgtgaatt |
130 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
11658581 |
ttgtgtgaattttgctaattttgaatttgacattagggtttgaatt |
11658536 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1463 (Bit Score: 94; Significance: 4e-46; HSPs: 1)
Name: scaffold1463
Description:
Target: scaffold1463; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 96 - 201
Target Start/End: Original strand, 38 - 143
Alignment:
| Q |
96 |
ttgctaattttgaatttgacattagggtgtgaattttgtgtaaattatagttgattttgatatgtgattgtgtgaattacagctttttcttcattgttag |
195 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38 |
ttgctaatttcgaatttgacattagggtatgaattttatgtaaattatagttgattttgatatgtgattgtgtgaattacagctttttcttcattgttag |
137 |
T |
|
| Q |
196 |
aatagt |
201 |
Q |
| |
|
|||||| |
|
|
| T |
138 |
aatagt |
143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 51655562 - 51655661
Alignment:
| Q |
1 |
ttgaattatagtttttcattgattttgtgtaaattatcattgattatcaattacaatatagccaaaatggtttgattatcaattttgtgtaaattttgct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||| || ||||||| |
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|
| T |
51655562 |
ttgaattatagtttttcattgattttgtgtaaattatcattgattatcaattacagtatagtcagaatggtttgattatcaattttgtgcaagttttgct |
51655661 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 130
Target Start/End: Original strand, 51655525 - 51655568
Alignment:
| Q |
87 |
gtgtaaattttgctaattttgaatttgacattagggtgtgaatt |
130 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
51655525 |
gtgtgaattttgctaattttgaatttgacattagggtttgaatt |
51655568 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 42837291 - 42837235
Alignment:
| Q |
145 |
gttgattttgatatgtgattgtgtgaattacagctttttcttcattgttagaatagt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
42837291 |
gttgattttgatatgtgattgtgtgaattataactttttcttcattgttagaatagt |
42837235 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 35598651 - 35598707
Alignment:
| Q |
145 |
gttgattttgatatgtgattgtgtgaattacagctttttcttcattgttagaatagt |
201 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||||||||||| |||| |
|
|
| T |
35598651 |
gttgattttgatatgtgattgtgtgaaatatagctttttcttcattgttagattagt |
35598707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 174
Target Start/End: Original strand, 35599240 - 35599269
Alignment:
| Q |
145 |
gttgattttgatatgtgattgtgtgaatta |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
35599240 |
gttgattttgatatgtgattgtgtgaatta |
35599269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0368 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0368
Description:
Target: scaffold0368; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 13515 - 13569
Alignment:
| Q |
145 |
gttgattttgatatgtgattgtgtgaattacagctttttcttcattgttagaata |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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|
| T |
13515 |
gttgattttgatatgtgattgtgtgaattatacttttttcttcattgttagaata |
13569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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