View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9774_low_2 (Length: 607)

Name: NF9774_low_2
Description: NF9774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9774_low_2
NF9774_low_2
[»] chr5 (7 HSPs)
chr5 (1-592)||(38816162-38816753)
chr5 (237-386)||(38821782-38821928)
chr5 (7-105)||(22423764-22423864)
chr5 (58-107)||(8420075-8420124)
chr5 (53-105)||(9929668-9929720)
chr5 (77-107)||(24906250-24906280)
chr5 (128-166)||(35665559-35665597)
[»] chr1 (2 HSPs)
chr1 (52-105)||(48547938-48547991)
chr1 (4-107)||(44482234-44482343)
[»] chr6 (6 HSPs)
chr6 (6-105)||(8805524-8805625)
chr6 (3-73)||(10294110-10294181)
chr6 (58-105)||(426478-426525)
chr6 (58-105)||(5732474-5732521)
chr6 (77-107)||(34073276-34073306)
chr6 (64-105)||(2117134-2117175)
[»] chr7 (6 HSPs)
chr7 (1-105)||(11700804-11700909)
chr7 (1-75)||(29787354-29787427)
chr7 (7-73)||(9933282-9933347)
chr7 (1-56)||(19206051-19206107)
chr7 (77-106)||(17852091-17852120)
chr7 (77-105)||(15680900-15680928)
[»] scaffold0168 (3 HSPs)
scaffold0168 (44-105)||(21217-21278)
scaffold0168 (44-105)||(21088-21149)
scaffold0168 (44-105)||(21346-21407)
[»] chr3 (5 HSPs)
chr3 (1-75)||(8039818-8039893)
chr3 (69-107)||(4466538-4466576)
chr3 (77-107)||(5440965-5440995)
chr3 (69-107)||(13807237-13807275)
chr3 (69-105)||(27505334-27505370)
[»] chr2 (8 HSPs)
chr2 (1-56)||(1327979-1328033)
chr2 (58-105)||(19536361-19536408)
chr2 (58-105)||(19574031-19574078)
chr2 (1-73)||(44860321-44860394)
chr2 (58-104)||(18255945-18255991)
chr2 (58-104)||(34691770-34691816)
chr2 (58-104)||(34714182-34714228)
chr2 (69-105)||(42511322-42511358)
[»] chr4 (3 HSPs)
chr4 (2-73)||(30982863-30982935)
chr4 (61-105)||(18844423-18844467)
chr4 (69-105)||(28470448-28470484)
[»] scaffold0450 (1 HSPs)
scaffold0450 (77-105)||(8564-8592)
[»] scaffold0027 (1 HSPs)
scaffold0027 (59-107)||(46731-46778)
[»] chr8 (1 HSPs)
chr8 (2-58)||(37283812-37283867)


Alignment Details
Target: chr5 (Bit Score: 564; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 1 - 592
Target Start/End: Complemental strand, 38816753 - 38816162
Alignment:
Q  1 acaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgctt 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  38816753 acaccgctaataatttgagaaaatcgctatatttcagtataattatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgatt 38816654  T
Q  101 catagttatattcgtgaatcgtgatagtgttggagactgacatctgttggacactggacacacctttaatatgaagtctcggtgctagatatttatggga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38816653 catagttatattcgtgaatcgtgatagtgttggagactgacatctgttggacactgcacacacctttaatatgaagtctcggtgctagatatttatggga 38816554  T
Q  201 gatatttatttgtgaagtttctttctaaggctttcttgttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816553 gatatttatttgtgaagtttctttctaaggctttcttgttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaa 38816454  T
Q  301 gatgaaggaggaatgcttgggtgggtgagaaagggacaaatggtatgctgttgtttaggtttaattaaaccttgttcttagggttttacattttgtctag 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816453 gatgaaggaggaatgcttgggtgggtgagaaagggacaaatggtatgctgttgtttaggtttaattaaaccttgttcttagggttttacattttgtctag 38816354  T
Q  401 attttgcagttggctactttttgtggttacagttggtatacatcacggccttatgtaaattaaactgactttgtctgttagagaaggttatatagttgta 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38816353 attttgcagttggctactttttgtggttacagttggtatacatcacggccttatgtaaattaaactgactttgtctgttagagaagggtatatagttgta 38816254  T
Q  501 tgaggtttctttgggtaggtgagaaattgaggttcaaatgatacaatatcccttttcttgcattttctttcacttagttatgataattgtgc 592  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  38816253 tgaggtttctttgggtaggtgagaaattgaggttcaaaggatacaatataccttttcttgcattttctttcactgagttatgataattgtgc 38816162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 237 - 386
Target Start/End: Complemental strand, 38821928 - 38821782
Alignment:
Q  237 tgttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaagatgaaggaggaatgcttgggtgggtgagaaaggga 336  Q
    |||||||||| |||||||||||||||| ||||||||||||||  ||||  | ||||| |||||||| |||||||||| ||||||||||||||||||||||    
T  38821928 tgttgtgtgtccaggtgaagatttgagcgatcttgctgtggactattcggtgtgcccatctaaagaagaaggaggaaggcttgggtgggtgagaaaggga 38821829  T
Q  337 caaatggtatgctgttgtttaggtttaattaaaccttgttcttagggttt 386  Q
    |||||||||   || ||||||| |||  ||||| ||||||||||||||||    
T  38821828 caaatggta---tgatgtttagatttgcttaaatcttgttcttagggttt 38821782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 22423864 - 22423764
Alignment:
Q  7 ctaataatttgagaaaatcgctatatttcattataattatgt--gtcggtgtggtgtcggtgtc-ggacatggctaattcgaggagtgtccgtgcttcat 103  Q
    ||||||||||||||||||| | ||| |||| ||||||||| |  |||||||| ||||||||||| ||||| | ||||| |||||||||||||||||||||    
T  22423864 ctaataatttgagaaaatcac-ataattcaatataattatatatgtcggtgtcgtgtcggtgtctggacacgcctaatccgaggagtgtccgtgcttcat 22423766  T
Q  104 ag 105  Q
    ||    
T  22423765 ag 22423764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 8420075 - 8420124
Alignment:
Q  58 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatagtt 107  Q
    |||||||||||||||  | |||||||||||||| ||||||||||||||||    
T  8420075 gtgtcggtgtcggacgcgcctaattcgaggagtatccgtgcttcatagtt 8420124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 9929668 - 9929720
Alignment:
Q  53 gtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 105  Q
    |||| |||||||| ||||||| | ||||||||||||||||| |||||||||||    
T  9929668 gtgtcgtgtcggtatcggacacgactaattcgaggagtgtctgtgcttcatag 9929720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 77 - 107
Target Start/End: Complemental strand, 24906280 - 24906250
Alignment:
Q  77 ctaattcgaggagtgtccgtgcttcatagtt 107  Q
    |||||||||||||||||||||||||||||||    
T  24906280 ctaattcgaggagtgtccgtgcttcatagtt 24906250  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 128 - 166
Target Start/End: Complemental strand, 35665597 - 35665559
Alignment:
Q  128 tgttggagactgacatctgttggacactggacacacctt 166  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  35665597 tgttggaaactgacatgtgttggacactggacacacctt 35665559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 48547991 - 48547938
Alignment:
Q  52 ggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 105  Q
    ||||| |||||||||||||| | | |||||||||||||||||||||||||||||    
T  48547991 ggtgtcgtgtcggtgtcggatacgcctaattcgaggagtgtccgtgcttcatag 48547938  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 44482234 - 44482343
Alignment:
Q  4 ccgctaataatttgagaaaatcgctatatttcattataattat--gtgtcggtgtggtgtcggtgtcggacatg-----gctaattcgaggagtgtccgt 96  Q
    ||||| |||||||||||||||| | ||| |||| | |||||||  |||||||||| |||||||||||||||| |     |||||| ||||||||||||||    
T  44482234 ccgcttataatttgagaaaatcac-ataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacacagctaatccgaggagtgtccgt 44482332  T
Q  97 gcttcatagtt 107  Q
    ||| |||||||    
T  44482333 gctccatagtt 44482343  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 105
Target Start/End: Complemental strand, 8805625 - 8805524
Alignment:
Q  6 gctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggt---gtcggacatggctaattcgaggagtgtccgtgcttca 102  Q
    |||||||||||||||||||| | ||| || | | ||||||||||||||||| ||||| |    || ||||||| ||||| ||||||||||||||||||||    
T  8805625 gctaataatttgagaaaatcac-ataatttagtgtaattatgtgtcggtgtagtgtcagacacgtgggacatgcctaatccgaggagtgtccgtgcttca 8805527  T
Q  103 tag 105  Q
    |||    
T  8805526 tag 8805524  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 10294110 - 10294181
Alignment:
Q  3 accgctaataatttgagaaaatcgctatatttcattataattat--gtgtcggtgtggtgtcggtgtcggaca 73  Q
    |||||||||||||||||| |||||| |||||||| | |||||||  |||||||||| |||| |||||||||||    
T  10294110 accgctaataatttgagataatcgc-atatttcaatgtaattatatgtgtcggtgtcgtgttggtgtcggaca 10294181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 426525 - 426478
Alignment:
Q  58 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 105  Q
    |||||||||||||||| | |||||  ||||||||||||||||||||||    
T  426525 gtgtcggtgtcggacacgcctaatctgaggagtgtccgtgcttcatag 426478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 5732521 - 5732474
Alignment:
Q  58 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 105  Q
    |||||||||||||||| | ||||| |||||||||||| ||||||||||    
T  5732521 gtgtcggtgtcggacacgcctaatccgaggagtgtccatgcttcatag 5732474  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 77 - 107
Target Start/End: Complemental strand, 34073306 - 34073276
Alignment:
Q  77 ctaattcgaggagtgtccgtgcttcatagtt 107  Q
    |||||||||||||||||||||||||||||||    
T  34073306 ctaattcgaggagtgtccgtgcttcatagtt 34073276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 2117134 - 2117175
Alignment:
Q  64 gtgtcggacatggctaattcgaggagtgtccgtgcttcatag 105  Q
    |||||||||||| |||||  ||||||||||||||||||||||    
T  2117134 gtgtcggacatgcctaatcggaggagtgtccgtgcttcatag 2117175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 11700804 - 11700909
Alignment:
Q  1 acaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcgg--acatggctaattcgaggagtgtccgtgc 98  Q
    |||||| ||||||||||| |||||| | ||| |||| | |||||||||||| |||| || ||||||||||  ||| ||||||| |||||||||||| ||     
T  11700804 acaccgttaataatttgacaaaatcac-ataattcaatgtaattatgtgtctgtgttgtctcggtgtcggacacacggctaatccgaggagtgtccctga 11700902  T
Q  99 ttcatag 105  Q
    |||||||    
T  11700903 ttcatag 11700909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 29787427 - 29787354
Alignment:
Q  1 acaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcggacatg 75  Q
    ||||||||||||||||||||||||| | ||| |||| | ||||||||||| |||||  ||||||||| |||||||    
T  29787427 acaccgctaataatttgagaaaatcac-ataattcagtgtaattatgtgttggtgtaatgtcggtgttggacatg 29787354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 9933282 - 9933347
Alignment:
Q  7 ctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcggaca 73  Q
    |||||||||||| |||||| | |||||||| || | ||||||||| |||| ||||||||||||||||    
T  9933282 ctaataatttgaaaaaatcac-atatttcagtaaacttatgtgtcagtgtcgtgtcggtgtcggaca 9933347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 19206051 - 19206107
Alignment:
Q  1 acaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgt 56  Q
    ||||||||||||||||||||||||| | ||| |||||||||||  |||||||||||||    
T  19206051 acaccgctaataatttgagaaaatcac-ataattcattataattatatgtgtcggtgt 19206107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 106
Target Start/End: Original strand, 17852091 - 17852120
Alignment:
Q  77 ctaattcgaggagtgtccgtgcttcatagt 106  Q
    ||||||||||||||||||||||||||||||    
T  17852091 ctaattcgaggagtgtccgtgcttcatagt 17852120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 77 - 105
Target Start/End: Original strand, 15680900 - 15680928
Alignment:
Q  77 ctaattcgaggagtgtccgtgcttcatag 105  Q
    |||||||||||||||||||||||||||||    
T  15680900 ctaattcgaggagtgtccgtgcttcatag 15680928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 21217 - 21278
Alignment:
Q  44 tatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 105  Q
    ||||||||||| | ||||||||||| |||| | ||||| |||||||| ||||||||||||||    
T  21217 tatgtgtcggtatcgtgtcggtgtcagacacgcctaatccgaggagtatccgtgcttcatag 21278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 21088 - 21149
Alignment:
Q  44 tatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 105  Q
    ||||||||||| | ||||||||||| |||| | ||||| |||| ||| ||||||||||||||    
T  21088 tatgtgtcggtatcgtgtcggtgtcagacacgcctaatccgagaagtatccgtgcttcatag 21149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 21346 - 21407
Alignment:
Q  44 tatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 105  Q
    ||||||||||| | ||||||||||| |||| | ||||| |||| |||||| |||||||||||    
T  21346 tatgtgtcggtatcgtgtcggtgtcagacacgcctaatccgagaagtgtctgtgcttcatag 21407  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 8039893 - 8039818
Alignment:
Q  1 acaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtcggacatg 75  Q
    ||||||||||||||||||||||||   |||| |||| | ||||  ||||||||||||| ||||||||||||||||||    
T  8039893 acaccgctaataatttgagaaaat-tatataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacatg 8039818  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 69 - 107
Target Start/End: Complemental strand, 4466576 - 4466538
Alignment:
Q  69 ggacatggctaattcgaggagtgtccgtgcttcatagtt 107  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  4466576 ggacacggcttattcgaggagtgtccgtgcttcatagtt 4466538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 77 - 107
Target Start/End: Complemental strand, 5440995 - 5440965
Alignment:
Q  77 ctaattcgaggagtgtccgtgcttcatagtt 107  Q
    |||||||||||||||||||||||||||||||    
T  5440995 ctaattcgaggagtgtccgtgcttcatagtt 5440965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 69 - 107
Target Start/End: Original strand, 13807237 - 13807275
Alignment:
Q  69 ggacatggctaattcgaggagtgtccgtgcttcatagtt 107  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  13807237 ggacatgcctaattcgaggagtgtccgtgtttcatagtt 13807275  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 27505334 - 27505370
Alignment:
Q  69 ggacatggctaattcgaggagtgtccgtgcttcatag 105  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  27505334 ggacatgcctaatccgaggagtgtccgtgcttcatag 27505370  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 1327979 - 1328033
Alignment:
Q  1 acaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgt 56  Q
    |||||||||||||||||||||||||  || | |||| |||||||||||||||||||    
T  1327979 acaccgctaataatttgagaaaatc-ataaaattcagtataattatgtgtcggtgt 1328033  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 19536408 - 19536361
Alignment:
Q  58 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 105  Q
    |||||||||||||||| | ||||| |||||||||||| ||||||||||    
T  19536408 gtgtcggtgtcggacacgcctaatccgaggagtgtccatgcttcatag 19536361  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 19574031 - 19574078
Alignment:
Q  58 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 105  Q
    ||||||||||||||||   |||||||||||||||||| ||||||||||    
T  19574031 gtgtcggtgtcggacacacctaattcgaggagtgtccatgcttcatag 19574078  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 44860321 - 44860394
Alignment:
Q  1 acaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtcggaca 73  Q
    ||||||||||||||||||||||||||| ||| |||| | ||||  ||||||||||||| |||| ||||| |||||    
T  44860321 acaccgctaataatttgagaaaatcgc-ataattcagtgtaattatatgtgtcggtgtcgtgttggtgttggaca 44860394  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 18255991 - 18255945
Alignment:
Q  58 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcata 104  Q
    |||||||||||||||| | ||||| | ||||||||||||||||||||    
T  18255991 gtgtcggtgtcggacacgcctaatccaaggagtgtccgtgcttcata 18255945  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 34691816 - 34691770
Alignment:
Q  58 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcata 104  Q
    |||||||||||||||| | ||||| ||||||||||||||| ||||||    
T  34691816 gtgtcggtgtcggacacgcctaatccgaggagtgtccgtgtttcata 34691770  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 34714228 - 34714182
Alignment:
Q  58 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcata 104  Q
    |||||||||||||||| | ||||| ||||||||||||||| ||||||    
T  34714228 gtgtcggtgtcggacacgcctaatccgaggagtgtccgtgtttcata 34714182  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 42511358 - 42511322
Alignment:
Q  69 ggacatggctaattcgaggagtgtccgtgcttcatag 105  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  42511358 ggacacggctaatccgaggagtgtccgtgcttcatag 42511322  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 30982935 - 30982863
Alignment:
Q  2 caccgctaataatttgagaaaatcgctatatttcattataattat--gtgtcggtgtggtgtcggtgtcggaca 73  Q
    |||||||||| ||||||||||||| | |||||||| | |||||||  |||||||||| ||||||||||| ||||    
T  30982935 caccgctaatgatttgagaaaatcac-atatttcagtgtaattataagtgtcggtgtcgtgtcggtgtcagaca 30982863  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 18844467 - 18844423
Alignment:
Q  61 tcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 105  Q
    ||||||||||||| | ||||| |||| ||||||||||||||||||    
T  18844467 tcggtgtcggacacgcctaatccgagaagtgtccgtgcttcatag 18844423  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 28470448 - 28470484
Alignment:
Q  69 ggacatggctaattcgaggagtgtccgtgcttcatag 105  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  28470448 ggacatgcctaatccgaggagtgtccgtgcttcatag 28470484  T

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Target: scaffold0450 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 77 - 105
Target Start/End: Complemental strand, 8592 - 8564
Alignment:
Q  77 ctaattcgaggagtgtccgtgcttcatag 105  Q
    |||||||||||||||||||||||||||||    
T  8592 ctaattcgaggagtgtccgtgcttcatag 8564  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 46731 - 46778
Alignment:
Q  59 tgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatagtt 107  Q
    ||||||||||| ||| | ||||| |||||||||||||||||||||||||    
T  46731 tgtcggtgtcg-acacgcctaatccgaggagtgtccgtgcttcatagtt 46778  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 37283867 - 37283812
Alignment:
Q  2 caccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtgg 58  Q
    ||||||||||||| |||||||||| | ||| |||| | |||||||||||||||||||    
T  37283867 caccgctaataatctgagaaaatcac-ataattcagtgtaattatgtgtcggtgtgg 37283812  T

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