View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9774_low_3 (Length: 515)

Name: NF9774_low_3
Description: NF9774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9774_low_3
NF9774_low_3
[»] chr4 (8 HSPs)
chr4 (17-515)||(4122164-4122663)
chr4 (17-163)||(4119070-4119217)
chr4 (353-515)||(4346639-4346804)
chr4 (123-232)||(4131920-4132029)
chr4 (322-515)||(4362828-4363026)
chr4 (352-515)||(4319152-4319321)
chr4 (321-483)||(4337201-4337371)
chr4 (390-515)||(4132521-4132637)
[»] chr6 (5 HSPs)
chr6 (464-515)||(5178015-5178066)
chr6 (468-515)||(5279840-5279887)
chr6 (459-513)||(5126592-5126646)
chr6 (479-515)||(5065432-5065468)
chr6 (467-515)||(5688874-5688922)


Alignment Details
Target: chr4 (Bit Score: 480; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 17 - 515
Target Start/End: Original strand, 4122164 - 4122663
Alignment:
Q  17 agatcagactgcaaacctgattgcgtgaactgaagaaatgtattagactcacatagccacatagataaactcttcttgaaacatactgtgattgcaagat 116  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4122164 agatcagactgcaaacctgattgcgtgaattgaagaaatgtattagactcacatagccacatagataaactcttcttgaaacatactgtgattgcaagat 4122263  T
Q  117 tgttttcattttgaatgccttctttgaaaacatggctgatttccatctgcaagttctgttt-aagtctacttttcattttgttgatcaataatcaagtat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4122264 tgttttcattttgaatgccttctttgaaaacatggctgatttccatctgcaagttctgttttaagtctacttttcattttgttgatcaataatcaagtat 4122363  T
Q  216 cctggtttccttatcttcctaaagcattaggttcggatcttcgaaatcaagctcaatttcagaaccaaattggagattaaattaactcaaagaaactttt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4122364 cctggtttccttatcttcctaaagcattaggttcggatcttcgaaatcaagctcaatttcagaaccaaattggagattaaattaactcaaagaaactttt 4122463  T
Q  316 agccagcaattctttcacatcattcatctactagagttttcttcttttttgtctttgtttagtatcatctatgtgctctacttgcagagagaccctcttg 415  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4122464 agccagaaattctttcacatcattcatctactagagttttcttcttttttgtctttgtttagtatcatctatgtgctctacttgcagagagaccctcttg 4122563  T
Q  416 gcagcgcattcattttcatcaccaccaacaacattcttatttggtgcatggcattgctctattttttcaccgattggttcatcatatatgagataaactg 515  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4122564 gcagcgcattcattttcagcaccaccaacaacattcttatttggtgcatggcattgctctattttttcaccgattggttcatcatatatgagataaactg 4122663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 17 - 163
Target Start/End: Original strand, 4119070 - 4119217
Alignment:
Q  17 agatcagactgcaaacctgattgcgtgaactgaagaaatgtattagactcacatagccacatagataaactcttcttgaaacatactgtgattg-caaga 115  Q
    |||||||||||||||||||| || | |||| |||||||||||||||| |||||||| ||||||  | ||||||||||||| ||||||||||||| ||| |    
T  4119070 agatcagactgcaaacctgactgggagaacagaagaaatgtattagattcacatagtcacatatctgaactcttcttgaagcatactgtgattgccaata 4119169  T
Q  116 ttgttttcattttgaatgccttctttgaaaacatggctgatttccatc 163  Q
    |||| ||||||| ||||||||||| ||||||||||| ||||| |||||    
T  4119170 ttgtcttcatttcgaatgccttctctgaaaacatggttgattcccatc 4119217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 353 - 515
Target Start/End: Complemental strand, 4346804 - 4346639
Alignment:
Q  353 tttcttcttttttgtctttgtttagtatcatctatgtgctctacttgcagagagaccctcttggcagcgcattcattttcatcaccaccaac---aacat 449  Q
    |||||||||||||||||||| |||| ||||||| ||  |||||||||  |||| | |||||||| || ||||||||||||||||||||||||   |||||    
T  4346804 tttcttcttttttgtctttgattagaatcatctgtggactctacttgaggagaaatcctcttggaagagcattcattttcatcaccaccaacaataacat 4346705  T
Q  450 tcttatttggtgcatggcattgctctattttttcaccgattggttcatcatatatgagataaactg 515  Q
    || ||| ||||||||  || || |||||||||||  | ||||||||||||||||||||||||||||    
T  4346704 tcatatctggtgcatcacaatggtctattttttcgtcaattggttcatcatatatgagataaactg 4346639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 123 - 232
Target Start/End: Original strand, 4131920 - 4132029
Alignment:
Q  123 cattttgaatgccttctttgaaaacatggctgatttccatctgcaagttctgtttaagtctacttttcattttgttgatcaataatcaagtatcctggtt 222  Q
    |||||||||||| |||  | |||||||||||||||||||| ||||| |||||||||||| |||  || |||| |||||||||| ||||||||||||||||    
T  4131920 cattttgaatgctttcacttaaaacatggctgatttccatttgcaaattctgtttaagtatacaattaatttagttgatcaatcatcaagtatcctggtt 4132019  T
Q  223 tccttatctt 232  Q
    ||||||||||    
T  4132020 tccttatctt 4132029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 322 - 515
Target Start/End: Complemental strand, 4363026 - 4362828
Alignment:
Q  322 caattctttcacatcattcatct--actagagttttcttcttttttgtctttgtttagtatcatctatgtgctctacttgcagagagaccctcttggcag 419  Q
    ||||| ||| |||||||||||||  || || |||||||||||||||||||||| |||| ||||||| ||  |||||||||  |||| ||  |||||| ||    
T  4363026 caattttttaacatcattcatctccaccagtgttttcttcttttttgtctttgattagaatcatctgtggactctacttgaggagaaacaatcttggaag 4362927  T
Q  420 cgcattcattttcatcaccaccaac---aacattcttatttggtgcatggcattgctctattttttcaccgattggttcatcatatatgagataaactg 515  Q
     ||||||||||||||||||||||||   ||||||| ||| | | | ||  || || || |||||| |  | ||||||||||||||||||||||||||||    
T  4362926 agcattcattttcatcaccaccaacaataacattcgtatcttgggaatcacagtggtccatttttccgtcaattggttcatcatatatgagataaactg 4362828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 352 - 515
Target Start/End: Original strand, 4319152 - 4319321
Alignment:
Q  352 ttttcttcttttttgtctttgtttagtatcatctatgtgctctacttgcagagagaccctcttggcagcgcattcattttcatcac------caccaaca 445  Q
    |||||||||||| ||| |||||| |  ||||||| |  ||||||||||  |||||| |||| ||||||| ||||||||||||||||      || ||| |    
T  4319152 ttttcttcttttctgtttttgttcaaaatcatctgtaggctctacttggcgagagatcctcatggcagcacattcattttcatcaccgatatcaacaaga 4319251  T
Q  446 acattcttatttggtgcatggcattgctctattttttcaccgattggttcatcatatatgagataaactg 515  Q
    |||||||||| ||||| ||| |||||||| | | ||||  ||| ||||||||||||||||||||||||||    
T  4319252 acattcttatctggtgtatgacattgctccaatatttcgacgactggttcatcatatatgagataaactg 4319321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 321 - 483
Target Start/End: Complemental strand, 4337371 - 4337201
Alignment:
Q  321 gcaattctttcacatcattcatctac--tagagttttcttcttttttgtctttgtttagtatcatctatgtgctctacttgcagagagaccctcttggca 418  Q
    |||| ||||||||||| ||||||| |  | ||||||||||||||| ||| |||||||   |||||||    |||||||||| ||||||| ||||||||||    
T  4337371 gcaagtctttcacatctttcatcttcagtcgagttttcttcttttctgtttttgttttaaatcatctgcaggctctacttgaagagagatcctcttggca 4337272  T
Q  419 gcgcattcattttcatcaccac---caac---aacattcttatttggtgcatggcattgctctattttttc 483  Q
    || |||||||||| ||||||||   ||||   |||||||| || ||||||||| |||||||| | ||||||    
T  4337271 gcacattcatttttatcaccactctcaacgagaacattctcatctggtgcatgacattgctcaaatttttc 4337201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 390 - 515
Target Start/End: Original strand, 4132521 - 4132637
Alignment:
Q  390 gctctacttgcagagagaccctcttggcagcgcattcattttcatcaccaccaacaacattcttatttggtgcatggcattgctctattttttcaccgat 489  Q
    |||||||||| |||| || |||||||||||| ||||||||||||||||||| | ||    ||||     ||||||| |||||| | |  |||||||| ||    
T  4132521 gctctacttgaagagtgaacctcttggcagcacattcattttcatcaccactacca----tctt-----gtgcatgacattgccccaaattttcaccaat 4132611  T
Q  490 tggttcatcatatatgagataaactg 515  Q
    ||||||||||||||||||||||||||    
T  4132612 tggttcatcatatatgagataaactg 4132637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 464 - 515
Target Start/End: Complemental strand, 5178066 - 5178015
Alignment:
Q  464 tggcattgctctattttttcaccgattggttcatcatatatgagataaactg 515  Q
    ||||||||||| |||||||| || |||||||||||||||| |||||||||||    
T  5178066 tggcattgctccattttttctccaattggttcatcatatacgagataaactg 5178015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 515
Target Start/End: Complemental strand, 5279887 - 5279840
Alignment:
Q  468 attgctctattttttcaccgattggttcatcatatatgagataaactg 515  Q
    ||||||| |||||||| || |||||||||||||||| |||||||||||    
T  5279887 attgctccattttttctccaattggttcatcatatacgagataaactg 5279840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 513
Target Start/End: Original strand, 5126592 - 5126646
Alignment:
Q  459 gtgcatggcattgctctattttttcaccgattggttcatcatatatgagataaac 513  Q
    ||||||| |||||||  ||  ||||||| ||||||||||||||||||||||||||    
T  5126592 gtgcatgacattgcttcatagtttcaccaattggttcatcatatatgagataaac 5126646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 479 - 515
Target Start/End: Original strand, 5065432 - 5065468
Alignment:
Q  479 ttttcaccgattggttcatcatatatgagataaactg 515  Q
    |||||| | ||||||||||||||||||||||||||||    
T  5065432 ttttcagcaattggttcatcatatatgagataaactg 5065468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 467 - 515
Target Start/End: Original strand, 5688874 - 5688922
Alignment:
Q  467 cattgctctattttttcaccgattggttcatcatatatgagataaactg 515  Q
    |||||||| || |||||||  |||||||||||||||| |||||||||||    
T  5688874 cattgctccatattttcacgaattggttcatcatatacgagataaactg 5688922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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