View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9774_low_5 (Length: 455)
Name: NF9774_low_5
Description: NF9774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9774_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 7 - 438
Target Start/End: Original strand, 28953973 - 28954404
Alignment:
| Q |
7 |
ggagcagagagggaagggtgagaatttggagtatttggtgaaatggaaagatggaagtgctaatgagtggattaaggggaggtttgtggcggaggatttg |
106 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28953973 |
ggagaagagagggaaaggtgagaatttggagtatttggtgaaatggaaagatggaagtgctaatgagtggattaaggggaggtttgtggcggaggatttg |
28954072 |
T |
|
| Q |
107 |
gtgagggattatgaagctgggcttgaatatgcggtggcggaagcggtggttggtcggagagttggtgatgatgggaagtatgagtttttggtgaaatggg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28954073 |
gtgagggattatgaagctgggcttgaatatgcggtggcggaagcggtggttggtcggagagttggtgatgatgggaagtatgagtttttggtgaaatggg |
28954172 |
T |
|
| Q |
207 |
ttgatttggatgaacccacttgggagcccgaggagaatgttgattctgagcttgttaaggtgtttgatttgagtaataatcaagctcagcctggtaatga |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28954173 |
ttgatttggatgaacccacttgggagcccgaggagaatgttgattctgagcttgttaaagtgtttgatttgagtaataatcaagctcagcctggtaatga |
28954272 |
T |
|
| Q |
307 |
taatggggtttctacggttgatttgagtcagaatagttcaaatattgttagtgcatgataattgttttatttcataaatcaaatccattacaaatttttg |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28954273 |
taatggggtttctacggttgatttgagtcagaatagttcaaatattgttagtgcatgataattgttttgtttcataaatcaaatccattacaaatttttg |
28954372 |
T |
|
| Q |
407 |
cttgttacaatttacattatgagtcatttttt |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
28954373 |
cttgttacaatttacattatgagtcatttttt |
28954404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University