View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9775_high_2 (Length: 612)
Name: NF9775_high_2
Description: NF9775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9775_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 17 - 602
Target Start/End: Original strand, 42482830 - 42483420
Alignment:
| Q |
17 |
aagagtttatgtgctaaatgttgatcataaattagggtttcctaatgagtgtgtttgattgtatttgtggcaattagaggtttctttacnnnnnnnn-at |
115 |
Q |
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| T |
42482830 |
aagagtttatgtgctaaatgttgatcataaattagggtttcctaatgagtgtatttgattgtatttgtggcaattagaggtttctttacgttttttttat |
42482929 |
T |
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| Q |
116 |
ttgctgtgattttcttcttgggttttcccttgtctgatttattttgcttccatatattgttcttctatttcccatttgaaaggaatactttttcccattt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42482930 |
ttgctgtgattttcttcttgggttttcccttgtctgttttattttgcttccatatattgttcttctatttcccatttgaaaggaatactttttcccattt |
42483029 |
T |
|
| Q |
216 |
gggatggacacggcattggaatgataacagcatgtgttatcttacattctgaataagtgttatagccatttttatcattctaaatgtggtggattaact- |
314 |
Q |
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| T |
42483030 |
gggatggacacggcattggaatgataacagcatgtgttatcttacattctgaataagtgttatagccatttttatcattctaaatgtggtggattaactg |
42483129 |
T |
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| Q |
315 |
---ttactgatactgaaaccctaattatttggtaagcacgcctttttcctgatgacagggaacttcctgttcctgggtagactcttagacagttatctac |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
42483130 |
ctattactgatactgaaaccctaattatttggtaagcacgcctttttcctgatgacagggagcttcctgttcctgggtagactcttagacagttatatac |
42483229 |
T |
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| Q |
412 |
cttctatatatgtcgtaacatacataaggcatataaaagggtatattataatatttaatgaatttaatgtttgattatgcaattatgtatactgatacaa |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42483230 |
cttctatatatgtcgtaacatacataaggcatataaaagggtatattataatatttaatgaatttaatgtttgattatgcaattatgtatactgatacaa |
42483329 |
T |
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| Q |
512 |
ttatatgttttgatagttttccttgattagctcttgtcgtgtatttgccgtgatgagctcttgtcgtgttgctgtgtatttgtcgtgatgt |
602 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42483330 |
ttatatgttttgatagttttccttgattagctcttgtcgtgtatttgccgtgatgagctcttgtcgtgttgctgtgtatttgtcgtgatgt |
42483420 |
T |
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