View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9775_high_4 (Length: 369)

Name: NF9775_high_4
Description: NF9775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9775_high_4
NF9775_high_4
[»] chr8 (10 HSPs)
chr8 (150-351)||(13984019-13984220)
chr8 (11-62)||(13985084-13985135)
chr8 (150-351)||(36565933-36566137)
chr8 (165-256)||(19293988-19294079)
chr8 (150-290)||(42854705-42854846)
chr8 (185-296)||(13588883-13588995)
chr8 (150-308)||(12492534-12492693)
chr8 (165-275)||(28300811-28300922)
chr8 (207-312)||(41445052-41445158)
chr8 (150-216)||(33830922-33830988)
[»] chr1 (12 HSPs)
chr1 (164-351)||(37463568-37463758)
chr1 (150-267)||(7813967-7814084)
chr1 (195-349)||(46227041-46227198)
chr1 (150-350)||(8671308-8671510)
chr1 (150-351)||(51441456-51441660)
chr1 (150-351)||(43241073-43241277)
chr1 (150-308)||(32083437-32083596)
chr1 (154-308)||(51601489-51601644)
chr1 (165-242)||(34827809-34827886)
chr1 (150-351)||(49348086-49348290)
chr1 (169-228)||(52420943-52421002)
chr1 (207-283)||(32405254-32405331)
[»] scaffold0286 (1 HSPs)
scaffold0286 (147-351)||(190-397)
[»] chr6 (11 HSPs)
chr6 (147-351)||(2208091-2208298)
chr6 (150-351)||(5258842-5259047)
chr6 (150-308)||(33495638-33495797)
chr6 (150-345)||(27790548-27790746)
chr6 (150-308)||(9706206-9706366)
chr6 (151-312)||(26291208-26291371)
chr6 (150-308)||(5631248-5631407)
chr6 (169-267)||(30670360-30670459)
chr6 (218-307)||(20428397-20428487)
chr6 (239-351)||(6082786-6082901)
chr6 (168-257)||(2680760-2680849)
[»] chr3 (11 HSPs)
chr3 (150-290)||(19757433-19757574)
chr3 (150-290)||(19736615-19736756)
chr3 (151-244)||(26592129-26592222)
chr3 (151-351)||(29816891-29817094)
chr3 (162-290)||(25190828-25190957)
chr3 (175-256)||(48221265-48221346)
chr3 (150-267)||(47542403-47542521)
chr3 (151-243)||(27917069-27917161)
chr3 (150-351)||(51448401-51448605)
chr3 (147-258)||(6779386-6779497)
chr3 (255-308)||(9258317-9258370)
[»] chr7 (12 HSPs)
chr7 (150-308)||(36869981-36870140)
chr7 (150-348)||(32629997-32630197)
chr7 (150-351)||(11593339-11593543)
chr7 (150-351)||(33350498-33350702)
chr7 (150-351)||(36651380-36651584)
chr7 (150-351)||(46356543-46356747)
chr7 (150-290)||(31004673-31004814)
chr7 (150-282)||(37616373-37616506)
chr7 (153-351)||(38896997-38897198)
chr7 (239-351)||(49028667-49028782)
chr7 (150-351)||(39907071-39907275)
chr7 (166-313)||(23087823-23087971)
[»] chr5 (10 HSPs)
chr5 (154-308)||(27361-27516)
chr5 (150-351)||(3394097-3394301)
chr5 (150-351)||(20318377-20318581)
chr5 (150-308)||(3301280-3301439)
chr5 (150-290)||(24177973-24178114)
chr5 (150-351)||(2076166-2076370)
chr5 (169-347)||(10638688-10638869)
chr5 (150-350)||(1274652-1274855)
chr5 (246-351)||(12493150-12493258)
chr5 (188-216)||(27303175-27303203)
[»] chr4 (14 HSPs)
chr4 (150-302)||(16002351-16002504)
chr4 (165-301)||(17668030-17668167)
chr4 (165-256)||(54787953-54788044)
chr4 (150-290)||(56374739-56374880)
chr4 (150-308)||(27450865-27451024)
chr4 (150-271)||(10776111-10776233)
chr4 (150-290)||(53707243-53707384)
chr4 (210-308)||(1212059-1212158)
chr4 (150-308)||(1777707-1777866)
chr4 (150-351)||(48623219-48623423)
chr4 (165-252)||(52281011-52281098)
chr4 (151-258)||(55769070-55769176)
chr4 (188-237)||(54914904-54914953)
chr4 (218-351)||(39707848-39707984)
[»] chr2 (9 HSPs)
chr2 (150-348)||(45368317-45368518)
chr2 (150-351)||(2609914-2610118)
chr2 (210-351)||(24584358-24584502)
chr2 (150-267)||(41763741-41763859)
chr2 (172-351)||(14769684-14769867)
chr2 (169-308)||(12475132-12475272)
chr2 (184-308)||(8180226-8180351)
chr2 (150-290)||(30743072-30743213)
chr2 (196-308)||(13148753-13148866)
[»] scaffold0018 (1 HSPs)
scaffold0018 (150-308)||(30899-31058)
[»] scaffold0008 (1 HSPs)
scaffold0008 (187-258)||(48639-48710)


Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 150 - 351
Target Start/End: Complemental strand, 13984220 - 13984019
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13984220 cttctactcatgcggaagtcatacacttctaaggcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 13984121  T
Q  250 ctgcaaaaacatacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaattaattaaaagggtaagtgcttagggttacccttggtgcaa 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13984120 ctgcaaaaacatacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaattaattaaaagggtaagtgcttagggttatccttggtgcaa 13984021  T
Q  350 tc 351  Q
    ||    
T  13984020 tc 13984019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 13985135 - 13985084
Alignment:
Q  11 cagagagttgctctccccagagtaggtcagtagaccgaactgggtaaacaaa 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13985135 cagagagttgctctccccagagtaggtcagtagaccgaactgggtaaacaaa 13985084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 150 - 351
Target Start/End: Original strand, 36565933 - 36566137
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| ||||||  ||||| ||||||| ||||| ||||| ||||||| | | || |||| || |||||||||||| |  | || |||||| ||||    
T  36565933 cttctactcaagcggaatccatacgcttctaaggcttgcctccaggtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatcat 36566032  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa-ttaattaaaagggtaagtgcttagggtt-acccttggtg 346  Q
    ||||||||| ||||||||| ||| |||| |||||||| |||| ||| | ||||| ||||| | || ||||| | ||||  ||||||||| ||||||||||    
T  36566033 ctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgacccttggtg 36566132  T
Q  347 caatc 351  Q
    |||||    
T  36566133 caatc 36566137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 256
Target Start/End: Original strand, 19293988 - 19294079
Alignment:
Q  165 aagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcatctgcaaa 256  Q
    ||||||||||||||||| | ||||||||||||| ||||| ||||||| ||||| |||||||| |||  ||| |||||||| |||||||||||    
T  19293988 aagtcatacacttctaaggtttgtctccaagtccctaaccttccattaaatttatccctcgagtcttcaagaaggactacatcatctgcaaa 19294079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 150 - 290
Target Start/End: Original strand, 42854705 - 42854846
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| ||||||  ||||| ||| ||| ||||| ||||| ||||||| | | ||||| || | |||||||||||| | ||||| |||||| ||||    
T  42854705 cttctactcaggcggaaaccatacgcttttaaggcttgcctccaggtctctagcctcccatttaactcctccctcgactcaccaagcaagactacatcat 42854804  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttggatatgtt 290  Q
    ||||||||| ||||||||| ||| |||| |||||||| ||||    
T  42854805 ctgcaaaaagcatacatctcggtgctaactcttggatgtgtt 42854846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 185 - 296
Target Start/End: Complemental strand, 13588995 - 13588883
Alignment:
Q  185 ttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcatctgcaaaaa-catacatcttggttctaaatcttgg 283  Q
    |||||||||||| | |||| | |||||||||| |||| ||||||||| ||||| |||||| |||||  |||||| ||||||||||||| | || ||||||    
T  13588995 ttgtctccaagtgtttaacctcccattcaattcctccatcgactctccaagcaagactacatcatcaccaaaaagcatacatcttggtgcaaactcttgg 13588896  T
Q  284 atatgtttcgtaa 296  Q
    ||||||| |||||    
T  13588895 atatgttccgtaa 13588883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 308
Target Start/End: Original strand, 12492534 - 12492693
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| ||||||  ||||| ||||||| ||||  ||||| ||||||| | | |  |||| || |||||||||||| |  | || |||||| ||||    
T  12492534 cttctactcaagcggaatccatacgcttctaaggcttacctccaggtctctagcctccagttcacttcctccctcgactcacccaccaagactacatcat 12492633  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa 308  Q
    ||||||||| ||||||||| ||| |||| |||||||| |||| ||| | ||||| |||||    
T  12492634 ctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaa 12492693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 275
Target Start/End: Original strand, 28300811 - 28300922
Alignment:
Q  165 aagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcatctgcaaaa-acatac 263  Q
    ||||||||| |||||||  |||||||||||||||| ||| |  ||||||||| |||| ||||||||| ||  | |||||| |||| | |||||  |||||    
T  28300811 aagtcatacccttctaagacttgtctccaagtctccaacatctcattcaattcctccatcgactctccaattaagactacatcatgtacaaaacgcatac 28300910  T
Q  264 atcttggttcta 275  Q
    ||||||||||||    
T  28300911 atcttggttcta 28300922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 312
Target Start/End: Original strand, 41445052 - 41445158
Alignment:
Q  207 ccattcaatttctccctcgactctcaaagcaggactacttcatctgc-aaaaacatacatcttggttctaaatcttggatatgtttcgtaagtacattca 305  Q
    ||||| |||| |||||||||||||| ||| |||||||| |||||| | ||||| | |||||| ||| |||  | |||||| |||||||||| ||||| ||    
T  41445052 ccatttaattcctccctcgactctccaagtaggactacatcatctacaaaaaatagacatctcggtgctagcttttggatgtgtttcgtaattacatcca 41445151  T
Q  306 aaattaa 312  Q
    |||||||    
T  41445152 aaattaa 41445158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 33830922 - 33830988
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatt 216  Q
    ||||||||||  || |||||||||||||||||  ||||||||||||||||  || | ||||||||||    
T  33830922 cttctactcagccgaaagtcatacacttctaagacttgtctccaagtctccgacatcccattcaatt 33830988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 164 - 351
Target Start/End: Original strand, 37463568 - 37463758
Alignment:
Q  164 gaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcatctgcaaaaa-cata 262  Q
    |||| ||||||||||||| ||||||||| ||||||||||| | ||||||| || | |||||||||||  |||||||||||| ||||||||||||| ||||    
T  37463568 gaagccatacacttctaaggcttgtctcaaagtctctaacctcccattcatttccaccctcgactcttcaagcaggactacgtcatctgcaaaaagcata 37463667  T
Q  263 catcttggttctaaatcttggatatgtttcgtaagtacattcaaaa-ttaattaaaagggtaagtgcttagggtt-acccttggtgcaatc 351  Q
    ||||| ||| |||| |||||||| |||| |||||| |||| ||||| | || ||||| |||||| |||||||||| |||||||||||||||    
T  37463668 catctcggtgctaactcttggatgtgttccgtaagaacatccaaaactaaagtaaaaaggtaagggcttagggttgacccttggtgcaatc 37463758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 150 - 267
Target Start/End: Complemental strand, 7814084 - 7813967
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| ||||||| ||||||||| ||| ||||||||||||||||| ||| | |||||||||| |||||||||||||| ||||| |||||| ||||    
T  7814084 cttctactcaagcggaagccatacacttataaggcttgtctccaagtctc-aacctcccattcaattcctccctcgactctcgaagcatgactacatcat 7813986  T
Q  250 ctgca-aaaacatacatct 267  Q
    ||||| |||||||||||||    
T  7813985 ctgcaaaaaacatacatct 7813967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 195 - 349
Target Start/End: Original strand, 46227041 - 46227198
Alignment:
Q  195 gtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcatctgcaaaaa-catacatcttggttctaaatcttggatatgtttcg 293  Q
    ||||||||| | | ||||||||||||||||||||||| ||  ||| |||| |||| |||||||  ||||||||||||| |||| |||||||  |||||||    
T  46227041 gtctctaacctcctattcaatttctccctcgactctccaaatagggctacatcatatgcaaaaggcatacatcttggtgctaactcttggacgtgtttcg 46227140  T
Q  294 taagtacattcaaaa-ttaattaaaagggtaagtgcttagggtt-acccttggtgcaa 349  Q
    ||||||||| ||||| | || ||||| |||||| |||||||||| | |||||||||||    
T  46227141 taagtacatccaaaactaaagtaaaaaggtaagggcttagggttgatccttggtgcaa 46227198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 150 - 350
Target Start/End: Complemental strand, 8671510 - 8671308
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| ||||||  ||||| ||||||| ||||| ||||||||||||| | | || |||| || |||||||||||| |  | || |||||| ||||    
T  8671510 cttctactcaagcggaatccatacgcttctaaggcttgcctccaagtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatcat 8671411  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaattaattaaaagggtaagtgcttagggtt-acccttggtgc 347  Q
    ||||||||| ||||||||| ||| |||| |||||||| |||| ||| | |||||  ||| | || ||||| | ||||  ||||||||| ||||| |||||    
T  8671410 ctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatcaaaactaaagtaaaaagataaggacttagggttgaccctaggtgc 8671311  T
Q  348 aat 350  Q
    |||    
T  8671310 aat 8671308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 351
Target Start/End: Original strand, 51441456 - 51441660
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| ||||||  ||||| ||||||| ||||| ||||| ||||||| | | || |||| || |||||||||||| |  | || |||||| ||||    
T  51441456 cttctactcaagcggaatccatactcttctaaggcttgcctccaggtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatcat 51441555  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa-ttaattaaaagggtaagtgcttagggtt-acccttggtg 346  Q
    ||||||||| ||||||||| ||| |||| |||||||| |||| ||| | ||||| ||||| | ||  |||| | ||||  ||||||||| ||||||||||    
T  51441556 ctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagaaaaaagataaggacttagggttgacccttggtg 51441655  T
Q  347 caatc 351  Q
    |||||    
T  51441656 caatc 51441660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 351
Target Start/End: Original strand, 43241073 - 43241277
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| | ||||  ||||| ||||||| ||||  ||||| ||||||| | | || |||| || |||||||||||| |  | || |||||| ||||    
T  43241073 cttctactcaagtggaatccatacgcttctaaggcttacctccaggtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatcat 43241172  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa-ttaattaaaagggtaagtgcttagggtt-acccttggtg 346  Q
    ||||||||| ||||||||| ||| |||| |||||||| |||| ||| | ||||| ||||| | || ||||| | ||||  ||||||||| ||||||||||    
T  43241173 ctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgacccttggtg 43241272  T
Q  347 caatc 351  Q
    |||||    
T  43241273 caatc 43241277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 308
Target Start/End: Original strand, 32083437 - 32083596
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| ||||||  ||||| ||||| | ||||| ||||| ||||||| | | ||||| || | |||||||||||| | ||||| || ||| ||||    
T  32083437 cttctactcaggcggaaaccatacgcttctgaggcttgcctccaggtctctagcctcccatttaactcctccctcgactcaccaagcaagattacatcat 32083536  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa 308  Q
     |||||||| ||||||||| ||| |||| |||||||| ||||  || ||||||| |||||    
T  32083537 ttgcaaaaagcatacatctcggtgctaactcttggatgtgttctgtcagtacatccaaaa 32083596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 308
Target Start/End: Complemental strand, 51601644 - 51601489
Alignment:
Q  154 tactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcatctgc 253  Q
    |||||| ||||||  ||||| ||||||| ||||| ||||| ||||||| | | || |||| || |||||||||||| |  | || |||||| ||||||||    
T  51601644 tactcaagcggaatccatacgcttctaaggcttgcctccaggtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatcatctgc 51601545  T
Q  254 aaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa 308  Q
    ||||| ||||||||| ||| |||| |||||||| |||| ||| | ||||| |||||    
T  51601544 aaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaa 51601489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 242
Target Start/End: Original strand, 34827809 - 34827886
Alignment:
Q  165 aagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggact 242  Q
    ||||||||  ||||||| ||||||||| ||||||||||| | |||||||||| ||| |||||||||| ||||| ||||    
T  34827809 aagtcataggcttctaaggcttgtctctaagtctctaacctcccattcaattcctctctcgactctccaagcaagact 34827886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 351
Target Start/End: Original strand, 49348086 - 49348290
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| || |||  ||||| ||||||| ||||| ||||| ||||||| | | || |||| || |||||||||||| |  | |  |||||| ||||    
T  49348086 cttctactcaagcagaatccatacgcttctaaggcttgcctccaggtctctagcctcccgttcacttcctccctcgactcacccaccgagactacatcat 49348185  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa-ttaattaaaagggtaagtgcttaggg-ttacccttggtg 346  Q
    || |||||| ||||||||| ||| |||| |||||||| |||| ||| | ||||| ||||| | || ||||| | ||||  ||||||| | ||||||||||    
T  49348186 ctacaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggctgacccttggtg 49348285  T
Q  347 caatc 351  Q
    |||||    
T  49348286 caatc 49348290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 52421002 - 52420943
Alignment:
Q  169 catacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgact 228  Q
    |||||||| |||||||||||||| |||| || ||| |||||||||||| |||| ||||||    
T  52421002 catacactcctaaagcttgtctctaagtttccaaccttccattcaattcctccatcgact 52420943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 283
Target Start/End: Original strand, 32405254 - 32405331
Alignment:
Q  207 ccattcaatttctccctcgactctcaaagcaggactacttcatctgc-aaaaacatacatcttggttctaaatcttgg 283  Q
    ||||||||||||||| ||||||||| | ||| |||||| |||||| | ||||||||||| || ||| |||| ||||||    
T  32405254 ccattcaatttctccttcgactctccacgcatgactacatcatctacaaaaaacatacacctaggtgctaactcttgg 32405331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 147 - 351
Target Start/End: Original strand, 190 - 397
Alignment:
Q  147 ttacttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactactt 246  Q
    ||||||||||||| |||||||| |||| | |||||  || ||||||||||||||||| |||||||||||| ||||||||| | || ||||| |||||| |    
T  190 ttacttctactcaggcggaagttatacgcatctaagactagtctccaagtctctaaccttccattcaattcctccctcgattttccaagcaagactacat 289  T
Q  247 catctg-caaaaacatacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa-ttaattaaaagggtaagtgcttagggtt-acccttg 343  Q
    ||| || ||||  | ||||||||||| |||| |||||||| |||| ||||||||||| ||||| | || ||||| |||||| ||||||| || |||||||    
T  290 catttgccaaagtcgtacatcttggtgctaactcttggatgtgttccgtaagtacatccaaaactaaagtaaaaaggtaagggcttaggattgacccttg 389  T
Q  344 gtgcaatc 351  Q
    ||||||||    
T  390 gtgcaatc 397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 147 - 351
Target Start/End: Original strand, 2208091 - 2208298
Alignment:
Q  147 ttacttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactactt 246  Q
    ||||||||||||| |||||||| |||| | |||||  || ||||||||||||||||| |||||||||||| ||||||||| | || ||||| |||||| |    
T  2208091 ttacttctactcaggcggaagttatacgcatctaagactagtctccaagtctctaaccttccattcaattcctccctcgattttccaagcaagactacat 2208190  T
Q  247 catctg-caaaaacatacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa-ttaattaaaagggtaagtgcttagggtt-acccttg 343  Q
    ||| || ||||  | ||||||||||| |||| |||||||| |||| ||||||||||| ||||| | || ||||| |||||| ||||||| || |||||||    
T  2208191 catttgccaaagtcgtacatcttggtgctaactcttggatgtgttccgtaagtacatccaaaactaaagtaaaaaggtaagggcttaggattgacccttg 2208290  T
Q  344 gtgcaatc 351  Q
    ||||||||    
T  2208291 gtgcaatc 2208298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 150 - 351
Target Start/End: Original strand, 5258842 - 5259047
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| ||||||| ||||| ||||||| ||||| ||||| ||||||| | | ||||| || | |||||||||||| | ||||| |||| | ||||    
T  5258842 cttctactcaggcggaagccatacgcttctaaggcttgcctccaggtctctagcctcccatttaactcctccctcgactcaccaagcaagacttcatcat 5258941  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaattaa--ttaaaagggtaagtgcttaggg-ttacccttggt 345  Q
    ||||||||| ||||||||| ||| |||| |||||||| |||| ||| ||||||| ||||| |||  | |||| | ||||  ||||||| |||||||||||    
T  5258942 ctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcagtacatccaaaactaaagtaaaaaagataaggacttagggtttacccttggt 5259041  T
Q  346 gcaatc 351  Q
    ||||||    
T  5259042 gcaatc 5259047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 308
Target Start/End: Complemental strand, 33495797 - 33495638
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| ||||||  ||||| ||| ||| | ||| ||||||||||||| | | |  ||||||| ||||||| |||| | ||||| |||||| ||||    
T  33495797 cttctactcaggcggaaaccatacgcttttaaggtttgactccaagtctctagcctcctgttcaattcctccctcaactcaccaagcaagactacatcat 33495698  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa 308  Q
     |||||||| ||||||||| | | ||||||||||||| |||| ||| |||||||||||||    
T  33495697 atgcaaaaagcatacatctcgatgctaaatcttggatgtgttccgtcagtacattcaaaa 33495638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 150 - 345
Target Start/End: Complemental strand, 27790746 - 27790548
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    ||||||| || ||| |||| ||||||||| || |||||| || |||| |||||| | |||||||||| |||||||||| ||| || || |||||| ||||    
T  27790746 cttctacccaggcgaaagttatacacttcaaaggcttgtatcaaagtatctaacctcccattcaattcctccctcgacactccaaacatgactacatcat 27790647  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa-ttaattaaaagggtaagtgcttagggtt-acccttggt 345  Q
     ||  |||| ||||||||||| | |||| | |||||| |||||| ||||| ||||||||| | || ||||| |||||| | |||||||| |||||||||    
T  27790646 atgtgaaaagcatacatcttgatgctaacttttggatgtgtttcataagtgcattcaaaactaaagtaaaaaggtaagggtttagggttgacccttggt 27790548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 150 - 308
Target Start/End: Complemental strand, 9706366 - 9706206
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| |||| |  ||||| ||||||| ||||| ||||| ||||||| | | ||||| || |||||||||||||| | ||||| |||||| ||||    
T  9706366 cttctactcaggcgggaaccatactcttctaaggcttgcctccaggtctctagcctcccatttaacttctccctcgactcaccaagcaagactacatcat 9706267  T
Q  250 ct--gcaaaaacatacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa 308  Q
     |  | |||| |||||| || ||| |||| |||||||| |||||||| ||||||| |||||    
T  9706266 ttgggaaaaagcatacaactcggtgctaactcttggatgtgtttcgtcagtacatccaaaa 9706206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 312
Target Start/End: Complemental strand, 26291371 - 26291208
Alignment:
Q  151 ttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcatc 250  Q
    |||||||||  || || |||||| |||||||  ||| | ||||||||  |||| | |||| ||||| ||||||||||| || |||||||||||| |||||    
T  26291371 ttctactcagacgaaattcatacgcttctaagacttctatccaagtcattaacctcccatgcaattcctccctcgactttccaagcaggactacatcatc 26291272  T
Q  251 tgcaaaaa--catacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaattaa 312  Q
    || |||||  ||||||||  |||  ||| |||||||| |||| ||||| ||||| |||||||||    
T  26291271 tgtaaaaaagcatacatcacggtgttaactcttggatgtgttccgtaaatacatccaaaattaa 26291208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 308
Target Start/End: Complemental strand, 5631407 - 5631248
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||||||||||  ||||| ||||||| ||||| || || ||||| | | | ||||| || | |||||||||||| | ||| | |||||  ||||    
T  5631407 cttctactcatgcggaaaccatactcttctaaggcttgcctacaggtctccagcctcccatttaactcctccctcgactcaccaagaaagactagatcat 5631308  T
Q  250 ctgc-aaaaacatacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa 308  Q
     ||| |||||||| ||||| ||| |||| |||||||| |||| ||| ||||||| |||||    
T  5631307 atgcaaaaaacatgcatctcggtgctaactcttggatgtgttccgtcagtacatccaaaa 5631248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 267
Target Start/End: Complemental strand, 30670459 - 30670360
Alignment:
Q  169 catacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcatctgcaaaaa-catacatct 267  Q
    ||||| ||| ||| ||||| ||| | ||||||||| | || ||||||| |||||||||||| | ||||| |||||| ||||||||||||| |||||||||    
T  30670459 catacgcttataaggcttgcctctaggtctctaacctcccgttcaattcctccctcgactcaccaagcaagactacatcatctgcaaaaagcatacatct 30670360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 307
Target Start/End: Original strand, 20428397 - 20428487
Alignment:
Q  218 ctccctcgactctcaaagcaggactacttcatctgcaaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacattcaaa 307  Q
    |||||| ||||| | ||||| |||||| ||||||||||||| ||||||||| ||| |||| ||||| || |||| ||||||||||| ||||    
T  20428397 ctcccttgactcaccaagcaagactacatcatctgcaaaaagcatacatctcggtgctaactcttgaatgtgttccgtaagtacatccaaa 20428487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 351
Target Start/End: Complemental strand, 6082901 - 6082786
Alignment:
Q  239 gactacttcatctgcaaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa-ttaattaaaagggtaagtgcttagggtt 336  Q
    |||||| ||||||||||||| ||||||||| ||| |||| |||||||| |||| ||| | ||||| ||||| | || ||||| | ||||  |||||||||    
T  6082901 gactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataagaacttagggtt 6082802  T
Q  337 -acccttggtgcaatc 351  Q
     |||||||||||||||    
T  6082801 gacccttggtgcaatc 6082786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 257
Target Start/End: Original strand, 2680760 - 2680849
Alignment:
Q  168 tcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcatctgcaaaa 257  Q
    |||||| ||||||| ||||||||||||||||||| | | || |||| || ||| ||||||||   ||||| |||||| ||||| ||||||    
T  2680760 tcatacgcttctaaggcttgtctccaagtctctagcatcccgttcagttcctcactcgactcatcaagcaagactacgtcatccgcaaaa 2680849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 150 - 290
Target Start/End: Complemental strand, 19757574 - 19757433
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||| | ||||| | ||||| ||||||| ||||||||||||||||||||| | |||||||||| ||||||| |||||| |||||||||| | ||||    
T  19757574 cttctactaaggcggatgccatacgcttctaaggcttgtctccaagtctctaacctcccattcaattcctccctcaactctccaagcaggactgcatcat 19757475  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttggatatgtt 290  Q
    ||||||||| ||||||||||||| |||| |||||||| ||||    
T  19757474 ctgcaaaaagcatacatcttggtgctaactcttggatgtgtt 19757433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 150 - 290
Target Start/End: Complemental strand, 19736756 - 19736615
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||| | ||||| | ||||||||||||| ||||||||| ||||||||||  | |||||||||| ||||||| |||||| |||||||||| | ||||    
T  19736756 cttctactaaggcggatgccatacacttctaaggcttgtctctaagtctctaatctcccattcaattcctccctcaactctccaagcaggactgcatcat 19736657  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttggatatgtt 290  Q
    ||||||||| ||||||||||||| |||| |||||||| ||||    
T  19736656 ctgcaaaaagcatacatcttggtgctaactcttggatgtgtt 19736615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 151 - 244
Target Start/End: Original strand, 26592129 - 26592222
Alignment:
Q  151 ttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactac 244  Q
    |||||||||||||||||| |||||||||||| ||||||||| |||||||||||||   ||| |||| |||||||||||||| || || ||||||    
T  26592129 ttctactcatgcggaagttatacacttctaaggcttgtctcaaagtctctaacttcttatttaattcctccctcgactctccaaccatgactac 26592222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 351
Target Start/End: Complemental strand, 29817094 - 29816891
Alignment:
Q  151 ttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcatc 250  Q
    ||||| ||| || |||| || |||||||||| ||||||||| |||||| |||  |  | |||||||  ||||| ||||||| ||| ||||||   |||||    
T  29817094 ttctattcaggcagaagccacacacttctaaggcttgtctctaagtctataagctcgcgttcaattcatcccttgactctccaagtaggactgtatcatc 29816995  T
Q  251 tgcaaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaattaa-ttaaaagggtaagtgcttagggtt-acccttggtgc 347  Q
    | |||||| ||||||||| ||| |||| ||| |||| ||||| |||||||||| ||||  |||  ||||| |||||| |||||||||| | |||||||||    
T  29816994 ttcaaaaaacatacatctcggtgctaactctaggatgtgttttgtaagtacatccaaacctaaggtaaaaaggtaagggcttagggttgagccttggtgc 29816895  T
Q  348 aatc 351  Q
    ||||    
T  29816894 aatc 29816891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 290
Target Start/End: Complemental strand, 25190957 - 25190828
Alignment:
Q  162 cggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcatctgcaaaaa-ca 260  Q
    ||||| ||| |||||||||| || || ||| | ||||||| | | ||||| || | |||||||||||| | ||||| |||||| ||||||||||||| ||    
T  25190957 cggaaatcacacacttctaaggcgtgcctctaggtctctagcctcccatttaactcctccctcgactcaccaagcaagactacatcatctgcaaaaagca 25190858  T
Q  261 tacatcttggttctaaatcttggatatgtt 290  Q
    ||||||| ||| |||| |||||||| ||||    
T  25190857 tacatctcggtgctaactcttggatgtgtt 25190828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 256
Target Start/End: Complemental strand, 48221346 - 48221265
Alignment:
Q  175 cttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcatctgcaaa 256  Q
    ||||||| ||||||||||||||||  ||| | |||||||||| ||| |||||||||||| |||| ||||| |||| ||||||    
T  48221346 cttctaaggcttgtctccaagtcttcaacctcccattcaattcctctctcgactctcaatgcagaactacatcatatgcaaa 48221265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 267
Target Start/End: Original strand, 47542403 - 47542521
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| ||||||  ||||| ||||||| ||||| ||||| ||||||| | | || |||| || |||||||||||| |  | || |||||| ||||    
T  47542403 cttctactcaagcggaatccatacgcttctaaggcttgcctccaggtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatcat 47542502  T
Q  250 ctgcaaaaa-catacatct 267  Q
    ||||||||| |||||||||    
T  47542503 ctgcaaaaagcatacatct 47542521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 27917161 - 27917069
Alignment:
Q  151 ttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggacta 243  Q
    ||||||||  || |||||||||| ||| ||| |||||||| ||||||| |||| |  ||||||||| ||||||||  |||| |||||||||||    
T  27917161 ttctactctggcagaagtcatacgcttataaggcttgtcttcaagtctttaacctctcattcaattcctccctcgtgtctctaagcaggacta 27917069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 351
Target Start/End: Original strand, 51448401 - 51448605
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| ||||||  ||||| |||||||  |||| ||| | ||||||| | | || |||| || ||||||| |||| |  | || |||||| ||||    
T  51448401 cttctactcaagcggaatccatacgcttctaagacttgcctctaggtctctagcgtcccgttcacttcctccctcaactcacccaccaagactacatcat 51448500  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa-ttaattaaaagggtaagtgcttagggtt-acccttggtg 346  Q
    ||||||||| ||||||||| | | |||| |||||||| |||| ||| | ||||| ||||| | || ||||| | ||||  ||||||||| ||||||||||    
T  51448501 ctgcaaaaagcatacatctcgatgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgacccttggtg 51448600  T
Q  347 caatc 351  Q
    |||||    
T  51448601 caatc 51448605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 258
Target Start/End: Complemental strand, 6779497 - 6779386
Alignment:
Q  147 ttacttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactactt 246  Q
    |||||||||||||  |||||| | ||| ||| ||| |||||||  |||||||  ||  ||  |||||||| ||||||||| |||| |||||| ||||| |    
T  6779497 ttacttctactcagacggaagacgtacgcttttaaggcttgtcaacaagtctacaagctttgattcaattcctccctcgattctctaagcagaactacat 6779398  T
Q  247 catctgcaaaaa 258  Q
    ||||||||||||    
T  6779397 catctgcaaaaa 6779386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 308
Target Start/End: Complemental strand, 9258370 - 9258317
Alignment:
Q  255 aaaacatacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa 308  Q
    ||||||||||||| ||| |||| |||||||| |||| ||||||||||| |||||    
T  9258370 aaaacatacatctcggtgctaactcttggatgtgttccgtaagtacatccaaaa 9258317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 150 - 308
Target Start/End: Original strand, 36869981 - 36870140
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| ||||||  ||||| ||||||||||||| ||||| | ||||| | | || ||||||| |||||||||||| | ||||| |||||| ||||    
T  36869981 cttctactcaagcggaaaccatacgcttctaaagcttgcctccaggcctctagcctcccgttcaattcctccctcgactcaccaagcaagactacatcat 36870080  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa 308  Q
    ||||||||| ||||||||| ||| |||  |||||||| |||| ||| ||||||| |||||    
T  36870081 ctgcaaaaagcatacatctcggtgctagctcttggatgtgttccgtcagtacatccaaaa 36870140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 150 - 348
Target Start/End: Complemental strand, 32630197 - 32629997
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| ||||||  ||||| ||||||| ||||| ||||| ||||||| | | ||||| || | |||||| ||||| |  |||| |||||| ||||    
T  32630197 cttctactcaggcggaaaccatacgcttctaaggcttgcctccaggtctctagcct-ccatttaactcctccctagactcacctagcaagactacatcat 32630099  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaatta-attaaaagggtaagtgcttagggtt-acccttggtg 346  Q
    ||||||||| ||||||||| ||| |||| |||||||| |||| ||| ||||||| ||||| || | ||||| | ||||  ||||||||| ||||||||||    
T  32630098 ctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgttagtacatccaaaactagagtaaaaagataaggacttagggttgacccttggtg 32629999  T
Q  347 ca 348  Q
    ||    
T  32629998 ca 32629997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 351
Target Start/End: Complemental strand, 11593543 - 11593339
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| ||||||  ||||| |||||||  |||| ||||| ||||||| | | || |||| || |||||||||||| |  | || |||||| ||||    
T  11593543 cttctactcaagcggaatccatacgcttctaagacttgcctccaggtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatcat 11593444  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa-ttaattaaaagggtaagtgcttagggtt-acccttggtg 346  Q
    ||||||||| ||||||||| ||| |||| |||||||| |||| ||| | ||||| ||||| | || ||||| | ||||  ||||||||| ||||||||||    
T  11593443 ctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgacccttggtg 11593344  T
Q  347 caatc 351  Q
    |||||    
T  11593343 caatc 11593339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 351
Target Start/End: Original strand, 33350498 - 33350702
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| ||||||  ||||| ||||||| ||||| ||||| ||||||| | | || |||| || |||||||||||| |  | || |||||| ||||    
T  33350498 cttctactcaagcggaatccatacgcttctaaggcttgcctccaggtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatcat 33350597  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa-ttaattaaaagggtaagtgcttagggtt-acccttggtg 346  Q
    ||||||||| ||||||||| ||| |||| |||||||| |||| ||| | ||||| ||||| | || ||||| | ||||   |||||||| ||||||||||    
T  33350598 ctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggagttagggttgacccttggtg 33350697  T
Q  347 caatc 351  Q
    |||||    
T  33350698 caatc 33350702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 351
Target Start/End: Complemental strand, 36651584 - 36651380
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| ||||||  ||||| ||||||| ||||| ||||| ||||||| | | || |||| || |||||||||||| |  | || |||||| ||||    
T  36651584 cttctactcaagcggaatccatacgcttctaaggcttgcctccaggtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatcat 36651485  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacat-tcaaaattaattaaaagggtaagtgcttagggtt-acccttggtg 346  Q
    ||||||||| ||||||||| ||| |||| |||||||| |||| ||| | ||||| | ||| | || ||||| | ||||  ||||||||| ||||||||||    
T  36651484 ctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatctaaaactaaagtaaaaagataaggacttagggttgacccttggtg 36651385  T
Q  347 caatc 351  Q
    |||||    
T  36651384 caatc 36651380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 351
Target Start/End: Original strand, 46356543 - 46356747
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| |||| |  ||||| ||||||| ||||| ||||| ||||||| ||| || |||| || |||||||||||| |  | || | |||| ||||    
T  46356543 cttctactcaagcggtatccatacgcttctaaggcttgcctccaggtctctagcttcccgttcacttcctccctcgactcacccaccaaggctacatcat 46356642  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa-ttaattaaaagggtaagtgcttagggtt-acccttggtg 346  Q
    ||||||||| ||||||||| ||| |||| |||||||| |||| ||| | ||||| ||||| | || ||||| | ||||  ||||||||| ||||||||||    
T  46356643 ctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgacccttggtg 46356742  T
Q  347 caatc 351  Q
    |||||    
T  46356743 caatc 46356747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 150 - 290
Target Start/End: Complemental strand, 31004814 - 31004673
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| ||||||  ||||| ||||||| ||||| ||||| ||||||| | | || |||| || |||||||||||| |  | || |||||| ||||    
T  31004814 cttctactcaagcggaatccatacgcttctaaggcttgcctccaggtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatcat 31004715  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttggatatgtt 290  Q
    ||||||||| ||||||||| ||| |||| |||||||| ||||    
T  31004714 ctgcaaaaagcatacatctcggtgctaactcttggatgtgtt 31004673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 282
Target Start/End: Complemental strand, 37616506 - 37616373
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| ||||||  ||||| ||||||| ||||| ||||| ||||||| | | || |||| || |||||||||||| |  | || |||||| ||||    
T  37616506 cttctactcaagcggaatccatacgcttctaaggcttgcctccaggtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatcat 37616407  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttg 282  Q
    ||||||||| ||||||||| ||| |||| |||||    
T  37616406 ctgcaaaaagcatacatctcggtgctaactcttg 37616373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 351
Target Start/End: Complemental strand, 38897198 - 38896997
Alignment:
Q  153 ctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcatctg 252  Q
    ||||||| ||||||  |||||||||| || ||||| ||||||||||||| | | || |||| || |||||||||||  | || || |||||| |||||||    
T  38897198 ctactcaagcggaatccatacacttcgaaggcttgcctccaagtctctagcctcccgttcacttcctccctcgactaaccaaccaagactacatcatctg 38897099  T
Q  253 caaaa-acatacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa-ttaattaaaagggtaagtgcttagggtt-acccttggtgcaa 349  Q
    |||||   |||||||| ||| |||| |||||||| |||| ||| | ||||| ||||| | ||  |||| | ||||  ||||||||| |||||||||||||    
T  38897098 caaaatgaatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagcaaaaagataaggacttagggttgacccttggtgcaa 38896999  T
Q  350 tc 351  Q
    ||    
T  38896998 tc 38896997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 351
Target Start/End: Complemental strand, 49028782 - 49028667
Alignment:
Q  239 gactacttcatctgcaaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa-ttaattaaaagggtaagtgcttagggtt 336  Q
    |||||| ||||||||||||| ||||||||||||| |||| |||||||| |||| ||| | ||||| ||||| | || ||||| | ||||  |||||||||    
T  49028782 gactacatcatctgcaaaaagcatacatcttggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggtt 49028683  T
Q  337 -acccttggtgcaatc 351  Q
     |||||||||||||||    
T  49028682 gacccttggtgcaatc 49028667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 351
Target Start/End: Original strand, 39907071 - 39907275
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| ||||||  ||||  |||||||   ||| ||||| ||||||| | | || |||| || |||||||||||| |  | || |||||| ||||    
T  39907071 cttctactcaagcggaatccatatgcttctaagatttgcctccaggtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatcat 39907170  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa-ttaattaaaagggtaagtgcttagggtt-acccttggtg 346  Q
    ||||||||| ||||||||| ||| |||| |||||||| |||| ||| | ||||| ||||| | || | ||| | ||||  ||||||||| ||||||||||    
T  39907171 ctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtgaaaagataaggacttagggttgacccttggtg 39907270  T
Q  347 caatc 351  Q
    |||||    
T  39907271 caatc 39907275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 313
Target Start/End: Original strand, 23087823 - 23087971
Alignment:
Q  166 agtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcatctgcaaaa-acataca 264  Q
    |||||||||||| |||  | | |||||||||||| ||| | |||||||||| |||| || |||| | ||  | |||||| |||||||||||| |||||||    
T  23087823 agtcatacacttttaagacatctctccaagtctccaacatcccattcaattcctccgtcaactcgccaattaagactacatcatctgcaaaatacataca 23087922  T
Q  265 tcttggttctaaatcttggatatgtttcgtaagtacattcaaaattaat 313  Q
    |||  || |||  | |||||| ||||| ||||||| || ||||| ||||    
T  23087923 tctcagtgctatctgttggatgtgttttgtaagtatatccaaaactaat 23087971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 154 - 308
Target Start/End: Complemental strand, 27516 - 27361
Alignment:
Q  154 tactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcatctgc 253  Q
    |||||| ||||||||| ||| ||||||| |||||| || ||||||| ||||| |||||||||| |||||||| ||||| || ||||||||| |||||  |    
T  27516 tactcaagcggaagtcctacgcttctaacgcttgtatctaagtctccaacttcccattcaattcctccctcgtctctccaaacaggactacatcatcgac 27417  T
Q  254 aaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa 308  Q
    ||||| ||||||||| | | |||| ||||||||||| | || |||||||| |||||    
T  27416 aaaaaacatacatctcgttgctaactcttggatatggtccgcaagtacatccaaaa 27361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 351
Target Start/End: Complemental strand, 3394301 - 3394097
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| ||||||  ||||| ||||||| ||||| ||||| ||||||| | | ||||| || | |||||||||||| | ||||| |||| | ||||    
T  3394301 cttctactcaggcggaaaccatacgcttctaaggcttgcctccaggtctctagcctcccatttaactcctccctcgactcaccaagcaagactgcatcat 3394202  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaatta-attaaaagggtaagtgcttaggg-ttacccttggtg 346  Q
    ||||||||| ||||||||| ||| |||| |||||||| |||| ||| ||||||| ||||| || | ||||  | ||||  ||||||| ||||||||||||    
T  3394201 ctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcagtacatccaaaactagagtaaagagataaggacttagggtttacccttggtg 3394102  T
Q  347 caatc 351  Q
    |||||    
T  3394101 caatc 3394097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 351
Target Start/End: Complemental strand, 20318581 - 20318377
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| ||||||  ||||| ||||||| ||||| ||||| ||||||| | | || |||| || |||||||||||| |  |  | |||||| ||||    
T  20318581 cttctactcaagcggaatccatacgcttctaaggcttgcctccaggtctctagcctcccgttcacttcctccctcgactcacccatgaagactacatcat 20318482  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa-ttaattaaaagggtaagtgcttagggtt-acccttggtg 346  Q
    ||||||||| ||||||||| ||| |||| ||||| || |||||||| | ||||| ||||| | || ||||| | ||||  ||||||||| ||||||||||    
T  20318481 ctgcaaaaagcatacatctcggtgctaactcttgaatgtgtttcgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgacccttggtg 20318382  T
Q  347 caatc 351  Q
    |||||    
T  20318381 caatc 20318377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 150 - 308
Target Start/End: Complemental strand, 3301439 - 3301280
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| ||||||  ||||| ||||||| ||||| ||||| ||||||| | | ||||| |||| ||||||| |||| | ||||| || | | ||||    
T  3301439 cttctactcaggcggaaaccatactcttctaaggcttgcctccaggtctctagcctcccatttaattcctccctcaactcaccaagcaagattgcatcat 3301340  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa 308  Q
    ||||||||| ||||||||| ||| |||| |||||||| ||||  || ||||||| |||||    
T  3301339 ctgcaaaaagcatacatctcggtgctaactcttggatgtgttctgtcagtacatccaaaa 3301280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 150 - 290
Target Start/End: Complemental strand, 24178114 - 24177973
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| ||||||  ||||||||||||| ||||| || || ||||||| | | || |||| || |||||||||||| |  | || |||||| ||||    
T  24178114 cttctactcaagcggaatccatacacttctaaggcttgccttcaggtctctagcctcccgttcacttcctccctcgactcactcaccaagactacatcat 24178015  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttggatatgtt 290  Q
    ||||||||| ||||||||| ||| |||| |||||||| ||||    
T  24178014 ctgcaaaaagcatacatctcggtgctaactcttggatgtgtt 24177973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 351
Target Start/End: Original strand, 2076166 - 2076370
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| ||||||  ||||| ||||||| ||||| |||||  |||||| | | || |||| || |||||| ||||| |  | || |||||| ||||    
T  2076166 cttctactcaagcggaatccatacgcttctaaggcttgcctccagctctctagcctcccgttcacttcctcccttgactcacccaccaagactacatcat 2076265  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa-ttaattaaaagggtaagtgcttagggtt-acccttggtg 346  Q
    ||||||||| ||||||||| ||| |||| |||||||| |||| ||| | ||||| ||||| | || ||||| | ||||  ||||||||| ||||||||||    
T  2076266 ctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgacccttggtg 2076365  T
Q  347 caatc 351  Q
    |||||    
T  2076366 caatc 2076370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 347
Target Start/End: Complemental strand, 10638869 - 10638688
Alignment:
Q  169 catacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcatctgcaaaaa-catacatct 267  Q
    ||||| ||||||| ||||| ||||| ||||||| | | || |||| || |||||||||||| |  | || |||||| ||||||||||||| |||||||||    
T  10638869 catacgcttctaaggcttgcctccaggtctctagcctaccgttcacttcctccctcgactcacccaccaagactacatcatctgcaaaaagcatacatct 10638770  T
Q  268 tggttctaaatcttggatatgtttcgtaagtacattcaaaa-ttaattaaaagggtaagtgcttagggtt-acccttggtgc 347  Q
     ||| |||| |||||||| |||| ||| | ||||| ||||| | || ||||| | ||||  ||||||||| |||||||||||    
T  10638769 cggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgacccttggtgc 10638688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 350
Target Start/End: Complemental strand, 1274855 - 1274652
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    ||||||||||  |||||  ||||| ||||||| ||||| ||||| ||||||| | |    |||| || |||||||||||| |  | || |||||| ||||    
T  1274855 cttctactcaaccggaatccatacgcttctaaggcttgcctccaggtctctagcctcatgttcacttcctccctcgactcacccaccaagactacatcat 1274756  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa-ttaattaaaagggtaagtgcttagggtt-acccttggtg 346  Q
    ||||||||| ||||||||| ||| |||| |||||||| |||| ||| | ||||| ||||| | || ||||| | ||||  ||||||||| ||||||||||    
T  1274755 ctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgacccttggtg 1274656  T
Q  347 caat 350  Q
    ||||    
T  1274655 caat 1274652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 351
Target Start/End: Original strand, 12493150 - 12493258
Alignment:
Q  246 tcatctgcaaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa-ttaattaaaagggtaagtgcttagggtt-accctt 342  Q
    ||||||||||||| ||||||||||||| |||| |||||||| |||| ||| | ||||| ||||| | || ||||| | ||||   |||||||| ||||||    
T  12493150 tcatctgcaaaaagcatacatcttggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggagttagggttgaccctt 12493249  T
Q  343 ggtgcaatc 351  Q
    |||||||||    
T  12493250 ggtgcaatc 12493258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 27303175 - 27303203
Alignment:
Q  188 tctccaagtctctaactttccattcaatt 216  Q
    |||||||||||||||||||||||||||||    
T  27303175 tctccaagtctctaactttccattcaatt 27303203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 150 - 302
Target Start/End: Complemental strand, 16002504 - 16002351
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| ||| ||  ||||| ||||||| ||||||||| | ||||||| | | || ||||||| ||||||| |||| | ||||| |||||| ||||    
T  16002504 cttctactcaagcgcaaaccatacgcttctaaggcttgtctctaggtctctagcctcccgttcaattcctccctcaactcaccaagcaagactacgtcat 16002405  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacat 302  Q
     |||||||| ||||||||| ||| |||| |||||||| |||| |||||||||||    
T  16002404 atgcaaaaaacatacatctcggtgctaactcttggatgtgttccgtaagtacat 16002351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 165 - 301
Target Start/End: Original strand, 17668030 - 17668167
Alignment:
Q  165 aagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcatctgcaaaa-acatac 263  Q
    ||||||||| |||||||  |||||||||||||||| ||| | |||||||||  |||||| ||| ||||||  | |||||| |||||| ||||| ||||||    
T  17668030 aagtcatacgcttctaagacttgtctccaagtctccaacatcccattcaatccctcccttgacactcaaattaagactacatcatcttcaaaacacatac 17668129  T
Q  264 atcttggttctaaatcttggatatgtttcgtaagtaca 301  Q
    |||||||| |||  | |||||| |||||||||||||||    
T  17668130 atcttggtgctagttgttggatgtgtttcgtaagtaca 17668167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 256
Target Start/End: Original strand, 54787953 - 54788044
Alignment:
Q  165 aagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcatctgcaaa 256  Q
    ||||||||||||||||| | ||||||||||||| ||||| ||||||| ||||| |||||||| |||  ||| |||||||| |||||||||||    
T  54787953 aagtcatacacttctaaggtttgtctccaagtccctaaccttccattaaatttatccctcgagtcttcaagaaggactacatcatctgcaaa 54788044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 150 - 290
Target Start/End: Complemental strand, 56374880 - 56374739
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| ||||||  ||||||||||||| ||||| ||||| ||||||| | | || |||| || |||||||||||| |  | || |||||| ||||    
T  56374880 cttctactcaagcggaatccatacacttctaaggcttgcctccaggtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatcat 56374781  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttggatatgtt 290  Q
    ||||||||| ||||||||| ||| |||| |||||||| ||||    
T  56374780 ctgcaaaaagcatacatctcggtgctaactcttggatgtgtt 56374739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 150 - 308
Target Start/End: Original strand, 27450865 - 27451024
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| ||||||  ||||| ||||||| ||||| ||| | ||||||| | | |||||  | | |||||||||||| | ||||| |||||| ||||    
T  27450865 cttctactcaagcggaaaccatacgcttctaaggcttgcctcgaggtctctagcctcccatttgactcctccctcgactcaccaagcaagactacatcat 27450964  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa 308  Q
    | ||||||| ||||||||| |||  ||| |||||||| |||||||| ||||||| |||||    
T  27450965 cggcaaaaagcatacatctcggtgttaactcttggatgtgtttcgttagtacatccaaaa 27451024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 271
Target Start/End: Original strand, 10776111 - 10776233
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    ||||| |||| ||||||| |||||| |||||| |||||||||||||| ||  || | ||||| |||| ||| |||||||||| | | |||||||  ||||    
T  10776111 cttctgctcaggcggaagccatacatttctaaggcttgtctccaagtgtcctacctcccatttaattcctctctcgactctccatgtaggactatatcat 10776210  T
Q  250 ctgcaaaaa-catacatcttggt 271  Q
    ||||||||| |||||||||||||    
T  10776211 ctgcaaaaagcatacatcttggt 10776233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 150 - 290
Target Start/End: Complemental strand, 53707384 - 53707243
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| ||||||  ||||| ||||||| ||||| ||||| ||||||| | | || |||| || |||||||||||| |  | || |||||| ||||    
T  53707384 cttctactcaagcggaatccatacgcttctaaggcttgcctccaggtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatcat 53707285  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttggatatgtt 290  Q
    ||||||||| ||||||||| ||| |||| |||||||| ||||    
T  53707284 ctgcaaaaagcatacatctcggtgctaactcttggatgtgtt 53707243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 308
Target Start/End: Original strand, 1212059 - 1212158
Alignment:
Q  210 ttcaatttctccctcgactctcaaagcaggactacttcatctgcaaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa 308  Q
    |||||||||||||||||||| | || || |||||| |||||| |||||| ||||||||| ||| |||| |||| ||| ||||  |||||||||| |||||    
T  1212059 ttcaatttctccctcgactcgccaatcaagactacatcatctccaaaaagcatacatctcggtgctaactcttagatgtgttatgtaagtacatccaaaa 1212158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 308
Target Start/End: Original strand, 1777707 - 1777866
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| ||||||  ||||| ||||||| | ||| ||||| ||||||| | | || |||| || |||||||||||| |  | || |||||| ||||    
T  1777707 cttctactcaagcggaatccatacgcttctaaggtttgcctccaggtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatcat 1777806  T
Q  250 ctgca-aaaacatacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa 308  Q
    ||||| ||| ||||||||| ||| |||| |||||||| |||| ||| | ||||| |||||    
T  1777807 ctgcataaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaa 1777866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 351
Target Start/End: Original strand, 48623219 - 48623423
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| ||||||  ||||| ||||||| ||||| |||||  ||| || | | || |||| || ||||||||||||    | || |||||| ||||    
T  48623219 cttctactcaagcggaatccatacgcttctaaggcttgcctccagatctatagcctcccgttcacttcctccctcgactcatccaccaagactacatcat 48623318  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa-ttaattaaaagggtaagtgcttagggtt-acccttggtg 346  Q
    ||||||||| ||||||||| ||| |||| |||||||| |||| ||| | ||||| ||||| | || ||||| | ||||  ||||||||| | ||||||||    
T  48623319 ctgcaaaaagcatacatctcggtgctaactcttggatgtgttacgtcaatacatccaaaactaaagtaaaaagataagaacttagggttgaaccttggtg 48623418  T
Q  347 caatc 351  Q
    |||||    
T  48623419 caatc 48623423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 252
Target Start/End: Original strand, 52281011 - 52281098
Alignment:
Q  165 aagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcatctg 252  Q
    ||||| ||||||||||| | |||||||||||| | |||  ||||||| ||||| |||||||||||||  || || ||||| |||||||    
T  52281011 aagtcgtacacttctaagggttgtctccaagtttgtaatcttccattaaatttatccctcgactctcttagtagtactacatcatctg 52281098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 258
Target Start/End: Original strand, 55769070 - 55769176
Alignment:
Q  151 ttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcatc 250  Q
    ||||||| | ||||||| ||||||| ||||| ||||||||  ||||||| ||  | |||||||||| ||| ||||| |||| || ||||||||| | |||    
T  55769070 ttctacttaggcggaagccatacacctctaaggcttgtctt-aagtctccaatctcccattcaattcctctctcgaatctccaaacaggactacattatc 55769168  T
Q  251 tgcaaaaa 258  Q
    ||||||||    
T  55769169 tgcaaaaa 55769176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 54914904 - 54914953
Alignment:
Q  188 tctccaagtctctaactttccattcaatttctccctcgactctcaaagca 237  Q
    |||||||||||||||| |||||||||||| |||  |||| ||||||||||    
T  54914904 tctccaagtctctaaccttccattcaattcctcaatcgagtctcaaagca 54914953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 351
Target Start/End: Complemental strand, 39707984 - 39707848
Alignment:
Q  218 ctccctcgactctcaaagcaggactacttcatctgca-aaaacatacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa-ttaatta 315  Q
    |||||||||||| | || || |||||| ||||||||| ||||||||||| | ||| | || |||||||| ||||  |||||||||| ||||| | || ||    
T  39707984 ctccctcgactcaccaaacaagactacatcatctgcaaaaaacatacatatcggtgcaaactcttggatgtgttctgtaagtacatccaaaactaaagta 39707885  T
Q  316 aaagggtaagtgcttagggtt-acccttggtgcaatc 351  Q
    ||| | ||||  ||||||||| |||||| ||||||||    
T  39707884 aaaagataaggacttagggttaacccttagtgcaatc 39707848  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 150 - 348
Target Start/End: Original strand, 45368317 - 45368518
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| ||| ||  ||||| ||||||| ||||| ||||| ||||||| | | ||||| || | |||||||||||| | ||||| |||||| ||||    
T  45368317 cttctactcaggcgaaaaccatacgcttctaaggcttgcctccaggtctctagcctcccatttaactcctccctcgactcaccaagcaagactacatcat 45368416  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa-ttaattaaaagggtaagtgcttagggtt-acccttggtg 346  Q
    ||||||||| ||||||||| ||| |||| |||||||| |||| ||| | ||||| ||||| | || ||||| | ||||  ||||||||| ||||||||||    
T  45368417 ctgcaaaaagcatacatctcggtgctaattcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgacccttggtg 45368516  T
Q  347 ca 348  Q
    ||    
T  45368517 ca 45368518  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 351
Target Start/End: Complemental strand, 2610118 - 2609914
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| ||||||  ||||| ||||||| ||||| ||||| || |||| | | || |||| || |||||||||||| |  | || |||||| ||||    
T  2610118 cttctactcaagcggaatccatacgcttctaaggcttgcctccaggtttctagcctcccgttcacttcctccctcgactcacccaccaagactacatcat 2610019  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa-ttaattaaaagggtaagtgcttagggtt-acccttggtg 346  Q
    ||||||||| ||||||||| ||| |||| |||||||| |||| ||| | ||||| ||||| | || ||||| | ||||  ||||||||| ||||||||||    
T  2610018 ctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgacccttggtg 2609919  T
Q  347 caatc 351  Q
    |||||    
T  2609918 caatc 2609914  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 351
Target Start/End: Original strand, 24584358 - 24584502
Alignment:
Q  210 ttcaatttctccctcgactctcaaagcaggactacttcatctgc-aaaaacatacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa 308  Q
    ||||||| |||||| ||||| | ||||| |||||| |||||||| |||||||||||||| |||  ||| |||||||| |||| ||| ||||||| |||||    
T  24584358 ttcaattcctcccttgactcaccaagcaagactacatcatctgcaaaaaacatacatctcggtgataactcttggatgtgttccgttagtacatccaaaa 24584457  T
Q  309 -ttaattaaaagggtaagtgcttagggtt-acccttggtgcaatc 351  Q
     | || ||||| | ||||  ||||||||| |||||||||||||||    
T  24584458 ctaaagtaaaaagataaggacttagggttgacccttggtgcaatc 24584502  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 150 - 267
Target Start/End: Original strand, 41763741 - 41763859
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| ||||||  ||||| || |||| ||||| ||||| ||||||| | | ||||| || | |||||||||||| | ||||| |||||| ||||    
T  41763741 cttctactcaggcggaaaccatacgctactaaggcttgcctccaggtctctagcctcccatttaactcctccctcgactcaccaagcaagactacatcat 41763840  T
Q  250 ctgcaaaaa-catacatct 267  Q
    ||||||||| |||||||||    
T  41763841 ctgcaaaaagcatacatct 41763859  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 351
Target Start/End: Complemental strand, 14769867 - 14769684
Alignment:
Q  172 acacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcatctgc--aaaaacatacatcttg 269  Q
    |||||||||| |||||||| |||||||| ||| |  |||| ||||  ||||||||||||| ||||| |||||| ||||| ||  |||||||||||| |||    
T  14769867 acacttctaaggcttgtcttcaagtctccaacctctcattgaattcgtccctcgactctccaagcatgactacatcatc-gcaaaaaaacatacatattg 14769769  T
Q  270 gttctaaatcttggatatgtttcgtaagtacattcaaaatt-aattaaaagggta-agtgcttagggtt-acccttggtgcaatc 351  Q
    || |||  ||||| || |||   |||||||||| ||||||| || ||||| | || || |||||||||| |||||||||||||||    
T  14769768 gtgctagctcttgaatgtgtgatgtaagtacatccaaaattaaagtaaaaagatacagggcttagggttgacccttggtgcaatc 14769684  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 169 - 308
Target Start/End: Original strand, 12475132 - 12475272
Alignment:
Q  169 catacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcatctgcaaaaa-catacatct 267  Q
    ||||| ||||||| ||||| ||||| ||||||| | | || |||| || |||||||||||| |  | || |||||| ||||||||||||| |||||||||    
T  12475132 catacgcttctaaggcttgcctccaggtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatcatctgcaaaaagcatacatct 12475231  T
Q  268 tggttctaaatcttggatatgtttcgtaagtacattcaaaa 308  Q
     ||| |||| |||||||| |||| ||| | ||||| |||||    
T  12475232 cggtgctaactcttggatgtgttccgtcaatacatccaaaa 12475272  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 308
Target Start/End: Complemental strand, 8180351 - 8180226
Alignment:
Q  184 cttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcatctgcaaaaa-catacatcttggttctaaatcttg 282  Q
    |||| ||||| ||||||| | | || |||| || |||||||||||| |  | || |||||| ||||||||||||| ||||||||| ||| |||| |||||    
T  8180351 cttgcctccaggtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttg 8180252  T
Q  283 gatatgtttcgtaagtacattcaaaa 308  Q
    ||| |||||||| | ||||| |||||    
T  8180251 gatgtgtttcgtcaatacatccaaaa 8180226  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 290
Target Start/End: Complemental strand, 30743213 - 30743072
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    ||||||| || ||||||  ||||  ||||||| | ||||||||||||||||| |   |  ||||||| |||||||||||| | |||||  ||||| ||||    
T  30743213 cttctacccaggcggaaaccatatgcttctaaggtttgtctccaagtctctagcgaccagttcaattcctccctcgactcaccaagcaaaactacatcat 30743114  T
Q  250 ctgcaaaa-acatacatcttggttctaaatcttggatatgtt 290  Q
    ||||||||  ||||||||| ||| |||| |||||||| ||||    
T  30743113 ctgcaaaattcatacatctcggtactaattcttggatgtgtt 30743072  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 308
Target Start/End: Complemental strand, 13148866 - 13148753
Alignment:
Q  196 tctctaactttccattcaatttctccctcgactctcaaagcaggactacttcatctgcaaaa-acatacatcttggttctaaatcttggatatgtttcgt 294  Q
    |||||||| | ||||||||||||||  ||||||||| |||| | ||| | |||||| |||||  |||||||||| || |||  |||||||| ||||  ||    
T  13148866 tctctaacctcccattcaatttctcattcgactctccaagcggaactgcatcatctacaaaatgcatacatcttagtgctagctcttggatgtgttctgt 13148767  T
Q  295 aagtacattcaaaa 308  Q
    |||||||| |||||    
T  13148766 aagtacatccaaaa 13148753  T

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Target: scaffold0018 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 308
Target Start/End: Complemental strand, 31058 - 30899
Alignment:
Q  150 cttctactcatgcggaagtcatacacttctaaagcttgtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcat 249  Q
    |||||||||| ||||||  ||||||||||||| ||||| ||||| ||||||| | | || |||| || |||||||||||| |  | || |||||| ||||    
T  31058 cttctactcaagcggaatccatacacttctaaggcttgcctccaggtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatcat 30959  T
Q  250 ctgcaaaaa-catacatcttggttctaaatcttggatatgtttcgtaagtacattcaaaa 308  Q
    ||||||||| ||||||||| ||| |||| |||||||| |||| ||| | ||||| |||||    
T  30958 ctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaa 30899  T

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Target: scaffold0008 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 258
Target Start/End: Original strand, 48639 - 48710
Alignment:
Q  187 gtctccaagtctctaactttccattcaatttctccctcgactctcaaagcaggactacttcatctgcaaaaa 258  Q
    ||||||||||||||||| | |||||||||| |||||||||||||| |||||  ||||| ||||||| |||||    
T  48639 gtctccaagtctctaacctcccattcaattcctccctcgactctccaagcaaaactacatcatctgaaaaaa 48710  T

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