View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9775_high_5 (Length: 338)
Name: NF9775_high_5
Description: NF9775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9775_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 320
Target Start/End: Complemental strand, 11664400 - 11664115
Alignment:
| Q |
19 |
catcaagtgataaggaaaagtaaattggaaggggagctattgaactgggaggactataggcaaatgcagttcactcaaaatgtaggaaattatgaaccag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11664400 |
catcaagtgataaggaaaagtaaattggaaggggagctattgaactgggaggactataggcaaatgcagttcactcaaaatgtaggaaattataaaccaa |
11664301 |
T |
|
| Q |
119 |
ttaaatattaagtgactttatagcaatatatgattttgcctcctagtgattttgttctttctcatgtgtggtatcnnnnnnnttgttaacactaggtgat |
218 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11664300 |
ttaaatattaagtgactttatagcagtatatgattttg----------------ttctttctcatgtgtggtatcaaaaaaattgttaacactaggtgat |
11664217 |
T |
|
| Q |
219 |
taatgaagctatgagatgtgggaatgttgtcaaatatctgcacaggaaagctgttcaagatatcaaattcaaaggtatttgtaaagttcatagcttttat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
11664216 |
taatgaagctatgagatgtgggaatgttgtcaaatatctgcacaggaaagctgttcaagatatcaaattcaaaggtatttgtaaagtttatagtttttat |
11664117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University