View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9775_high_6 (Length: 317)
Name: NF9775_high_6
Description: NF9775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9775_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 51 - 315
Target Start/End: Original strand, 56000776 - 56001040
Alignment:
| Q |
51 |
agacaaaaaccatggttgtgggtcaattctaaaatgggttggcaaaacttggtttaatattccatgtttgaatgctgtagaattaaaacgaggttttgga |
150 |
Q |
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| T |
56000776 |
agacaaaaaccatggttgtgggtcaattctaaaatgggttggcaaaacttggtttaatattccatgtttgaatgctgttgaattaaaacgaggttttgga |
56000875 |
T |
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| Q |
151 |
ggaagaaaagtgaaaggtttgaggttagtgttaagagaagaggaagaagataaaagcatatccataacttcttcaactgttgaatggtaaagcgatagag |
250 |
Q |
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| T |
56000876 |
ggaagaaaagtgaagggtttgaggttagtgttaagagaagaggaagaagataaaagcatatccataacttcttcaactgttgaatggtaaagcgatagag |
56000975 |
T |
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| Q |
251 |
tttaagcactgaaatgaaagtgtcaaagaacaagaacctaaagggtaaagtgtgtgttgtctctg |
315 |
Q |
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| T |
56000976 |
tttaagcactgaaatgaaagtgtcaaagaacaagaacctaaagggtaaagtgtgtgttgtgtctg |
56001040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 45 - 315
Target Start/End: Complemental strand, 3528797 - 3528528
Alignment:
| Q |
45 |
tgtcagagacaaaaaccatggttgtgggtcaattctaaaatgggttggcaaaacttggtttaatattccatgtttgaatgctgtagaattaaaacgaggt |
144 |
Q |
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| T |
3528797 |
tgtcaaagacaaaaatcatggttgtggatct-ttctaaaatgggttggcaaaacttggtttaatattccatatttgaatgctgtagaattaaaacgaggt |
3528699 |
T |
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| Q |
145 |
tttggaggaagaaaagtgaaaggtttgaggttagtgttaagagaagaggaagaagataaaagcatatccataacttcttcaactgttgaatggtaaagcg |
244 |
Q |
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| T |
3528698 |
tttggaggaagaaaagtgaagggtttgaggctagtgttaagaaaagaggaagaagataaaagcatatctataacttcttcaactgttgaatggtaaagcg |
3528599 |
T |
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| Q |
245 |
atagagtttaagcactgaaatgaaagtgtcaaagaacaagaacctaaagggtaaagtgtgtgttgtctctg |
315 |
Q |
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| T |
3528598 |
atagagtttaagcactgaaatgaaagtgtcaaataacaagaacctaaagggtaaagtgtgtgttgtgtctg |
3528528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 129 - 200
Target Start/End: Complemental strand, 27615528 - 27615457
Alignment:
| Q |
129 |
agaattaaaacgaggttttggaggaagaaaagtgaaaggtttgaggttagtgttaagagaagaggaagaaga |
200 |
Q |
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| T |
27615528 |
agaattaaaacgaggtttaagaggaaggaaagtgaagggtttgaggttggtgttgagagaagaagaagaaga |
27615457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 45 - 315
Target Start/End: Original strand, 45720414 - 45720684
Alignment:
| Q |
45 |
tgtcagagacaaaaaccatggttgtgggtcaattctaaaatgggttggcaaaacttggtttaatattccatgtttgaatgctgtagaattaaaacgaggt |
144 |
Q |
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| T |
45720414 |
tgtcaaagacaaaaaccatggttgtgggtcgattctaaaatgggttggcaaaacttggtttaatattccatgtttgaatgttgtagaattaaaacgagat |
45720513 |
T |
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| Q |
145 |
tttggaggaagaaaagtgaaaggtttgaggttagtgttaagagaagaggaagaagataaaagcatatccataacttcttcaactgttgaatggtaaagcg |
244 |
Q |
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||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||| |
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| T |
45720514 |
tttggagaaagaaaagtgaaggatttgaggttagtgttaagagaagaggaagaagataaaagcatatccataaattcttcaattgttgaatgataaagcg |
45720613 |
T |
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| Q |
245 |
atagagtttaagcactgaaatgaaagtgtcaaagaacaagaacctaaagggtaaagtgtgtgttgtctctg |
315 |
Q |
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| T |
45720614 |
atagagtttaagcactaaaatgaaagtgtcaaagaacaagaacctaaagggtaaagtgtatgttgtgtctg |
45720684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 1822322 - 1822271
Alignment:
| Q |
172 |
aggttagtgttaagagaagaggaagaagataaaagcatatccataacttcttc |
224 |
Q |
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| T |
1822322 |
aggttagtgttaagagaagaggaagaagatggaagc-tatccatgacttcttc |
1822271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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