View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9775_high_7 (Length: 255)
Name: NF9775_high_7
Description: NF9775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9775_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 7778562 - 7778786
Alignment:
| Q |
17 |
acatgcagccttacaccatatcgaatgatgcatcgtccaaatatgatctgtatgcagtagttgtgcatactggattttcatctacttcagggcattattt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7778562 |
acatgcagccttacaccatatcgaatgatgcatcgtccaaatatgatctgtatgcagtagttgtgcatactggattttcatctacttcagggcattattt |
7778661 |
T |
|
| Q |
117 |
tagctttgttcgcactgctccggatacatggcataagttagatgattcaatggttactatggtatctgaagagactgtgctgtctcaggaagcatacata |
216 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7778662 |
tagcttcgttcgcactgctccggatacatggcataagttagatgattcaatggttactatggtatctgaagagactgtgctgtctcaggaagcatacata |
7778761 |
T |
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| Q |
217 |
ttgttttatgcccgacaaggtactc |
241 |
Q |
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| T |
7778762 |
ttgttttatgcccgacaaggtactc |
7778786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 7773727 - 7773949
Alignment:
| Q |
17 |
acatgcagccttacaccatatcgaatgatgcatcgtccaaatatgatctgtatgcagtagttgtgcatactggattttcatctacttcagggcattattt |
116 |
Q |
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||||||||||||||||||| ||||||||||||||||| ||||| |||| |||||||| ||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
7773727 |
acatgcagccttacaccatttcgaatgatgcatcgtctaaatactatctatatgcagttgttgtccatactggaatttcatctacttcagggcattattt |
7773826 |
T |
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| Q |
117 |
tagctttgttcgcactgctccggatacatggcataagttagatgattcaatggttactatggtatctgaagagactgtgctgtctcaggaagcatacata |
216 |
Q |
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| T |
7773827 |
ctgcttcgttcgcactgctccggatacgtggcataaattggatgactcaatggttactaaggtatctgaagagactgtgctgtctcaggaagcatacata |
7773926 |
T |
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| Q |
217 |
ttgttttatgcccgacaaggtac |
239 |
Q |
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||||||||||| ||||||||||| |
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| T |
7773927 |
ttgttttatgctcgacaaggtac |
7773949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 7767592 - 7767814
Alignment:
| Q |
17 |
acatgcagccttacaccatatcgaatgatgcatcgtccaaatatgatctgtatgcagtagttgtgcatactggattttcatctacttcagggcattattt |
116 |
Q |
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||||||||||||||||||| ||||||||||||||||| ||||| |||| |||||||| ||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
7767592 |
acatgcagccttacaccatttcgaatgatgcatcgtctaaatactatctatatgcagttgttgtccatactggaatttcatctacttcagggcattattt |
7767691 |
T |
|
| Q |
117 |
tagctttgttcgcactgctccggatacatggcataagttagatgattcaatggttactatggtatctgaagagactgtgctgtctcaggaagcatacata |
216 |
Q |
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|||| |||||||||||||||| ||| |||||||| || ||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
7767692 |
ctgcttcgttcgcactgctccgggtacgtggcataaattggatgactcaatggttactaaggtttctgaagagactgtgctgtctcaggaagcatacata |
7767791 |
T |
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| Q |
217 |
ttgttttatgcccgacaaggtac |
239 |
Q |
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||||||||||| ||||||||||| |
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| T |
7767792 |
ttgttttatgctcgacaaggtac |
7767814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 55 - 170
Target Start/End: Complemental strand, 12753445 - 12753330
Alignment:
| Q |
55 |
aaatatgatctgtatgcagtagttgtgcatactggattttcatctacttcagggcattattttagctttgttcgcactgctccggatacatggcataagt |
154 |
Q |
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||||||||||| |||||||| |||||||||| |||| ||||||| || ||||||||||| ||||||||||||||||||| || ||||||||||||| |
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| T |
12753445 |
aaatatgatctatatgcagttgttgtgcataatggaacttcatctgactctgggcattatttctgctttgttcgcactgctccagacacatggcataagt |
12753346 |
T |
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| Q |
155 |
tagatgattcaatggt |
170 |
Q |
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| T |
12753345 |
tggatgattcaatggt |
12753330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 55 - 170
Target Start/End: Complemental strand, 12816405 - 12816290
Alignment:
| Q |
55 |
aaatatgatctgtatgcagtagttgtgcatactggattttcatctacttcagggcattattttagctttgttcgcactgctccggatacatggcataagt |
154 |
Q |
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||||||||||| |||||||| |||||||||| |||| ||||||| || ||||||||||| ||||||||||||||||||| || ||||||||||||| |
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| T |
12816405 |
aaatatgatctatatgcagttgttgtgcataatggaacttcatctgactctgggcattatttctgctttgttcgcactgctccagacacatggcataagt |
12816306 |
T |
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| Q |
155 |
tagatgattcaatggt |
170 |
Q |
| |
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| T |
12816305 |
tggatgattcaatggt |
12816290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 12753033 - 12752969
Alignment:
| Q |
172 |
actatggtatctgaagagactgtgctgtctcaggaagcatacatattgttttatgcccgacaagg |
236 |
Q |
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|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12753033 |
actaaggtatctgaagggactgtgctgtctcaggaagcatacatattgttttatgcccgacaagg |
12752969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 12815993 - 12815929
Alignment:
| Q |
172 |
actatggtatctgaagagactgtgctgtctcaggaagcatacatattgttttatgcccgacaagg |
236 |
Q |
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|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12815993 |
actaaggtatctgaagggactgtgctgtctcaggaagcatacatattgttttatgcccgacaagg |
12815929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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