View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9775_low_5 (Length: 437)
Name: NF9775_low_5
Description: NF9775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9775_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Complemental strand, 15688713 - 15688285
Alignment:
| Q |
1 |
acaggatagaagtaagtaaagcacataaataaaccactacacaccagaatccatacatttacgactcaatcttatcatgaatcttcattaaagtatcttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
15688713 |
acaggatagaagtaagtaaagcacataaataaaccactacacaccagaatccatacatttacgactcaatcttatcatgaatcttcactaaagtatcttt |
15688614 |
T |
|
| Q |
101 |
catatcatttatagtgatttaatgcatattaagctaaattttaacaacgaaactagtcaacaatgatgccaaaaatgctcctactatcgacgtgcaaggg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
15688613 |
catatcatttatagtgatttaatgcatattaagctaaattttaacaacgaaactagtcaacaatgatgccaaaaatgctcctgctatcgatgtgcaaggg |
15688514 |
T |
|
| Q |
201 |
tcatcttacttttcttgcaggctaaatctcattagccgctcagagtccaatatttgggctacaataacccacttcagtgtcatttagccatgctcacagt |
300 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15688513 |
tcatcttacttttcttacaggctaaatctcattagccgctcatagtccaatgtttgggctacaataacccacttcagtgtcatttagccatgctcacagt |
15688414 |
T |
|
| Q |
301 |
aataataatgatacttttcatctaaaagatgggatcaaccatcaaccttgtgcacctatacacaatatagtggcataaacatagacataagttgcaagtt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15688413 |
aataataatgatacttttcatctaaaagatgggatcaaccatcaaccttgtgcacctatacacaatatagtggcataaacatagacataagttgcaagtt |
15688314 |
T |
|
| Q |
401 |
caatcaatagccttctcattacctttgct |
429 |
Q |
| |
|
||||||||||| ||||||||||||||||| |
|
|
| T |
15688313 |
caatcaatagctttctcattacctttgct |
15688285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 11 - 379
Target Start/End: Complemental strand, 15696729 - 15696374
Alignment:
| Q |
11 |
agtaagtaaagcacataaataaaccactacacaccagaatccatacatttacgactcaatcttatcatgaatcttcattaaagtatctttcatatcattt |
110 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| | |||||| |||| ||||||||||||| ||||||||||||||| | |||||| |
|
|
| T |
15696729 |
agtaagtaaaacacataaataaaccactacacactacaatccacacatcaacgactcaatctt------------cattaaagtatctttaagatcattc |
15696642 |
T |
|
| Q |
111 |
atagtgatttaatgcatattaagctaaattttaacaacgaaactagtcaacaatgatgccaaaaatgctcctactatc-gacgtgcaagggtcatcttac |
209 |
Q |
| |
|
|| ||| |||| || |||| ||||||||| | || |||||||| | ||||||||||||||||| | ||| | | | | ||||||||||||||| |
|
|
| T |
15696641 |
ctaacgatgtaattaatgttaaactaaattttgataaggaaactagctat---tgatgccaaaaatgctcttgctacccggcatacaagggtcatcttac |
15696545 |
T |
|
| Q |
210 |
ttttcttgcaggctaaatctcattagccgctcagagtccaatatttgggctacaataacccacttcagt--gtcatttagccatgctcacagtaataata |
307 |
Q |
| |
|
||| || || |||||||||||||| || | |||||||||||||||||||| |||||||||||| ||| |||| | || | | | ||||||| |
|
|
| T |
15696544 |
tttctgtggagtctaaatctcattagtcggttagagtccaatatttgggctagaataacccactttagtcggtcagagtccaatattta-ggcaataata |
15696446 |
T |
|
| Q |
308 |
atgatacttttcatctaaaagatgggatcaaccatcaaccttgtgcacctatacacaatatagtggcataaa |
379 |
Q |
| |
|
|||||| ||||| | |||||||||||| ||||||||||||||||||| | ||||| || ||| ||||||||| |
|
|
| T |
15696445 |
atgataattttcttataaaagatgggaccaaccatcaaccttgtgcatccatacataagataatggcataaa |
15696374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 24759630 - 24759687
Alignment:
| Q |
321 |
tctaaaagatgggatcaaccatcaaccttgtgcacctatacacaatatagtggcataa |
378 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||| | |||||||| ||||| |||||| |
|
|
| T |
24759630 |
tctaaaagatgggaccaataatcaaccttgtgcatccatacacaagatagttgcataa |
24759687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University