View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9775_low_6 (Length: 390)
Name: NF9775_low_6
Description: NF9775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9775_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 383
Target Start/End: Original strand, 35210506 - 35210871
Alignment:
| Q |
18 |
gatatcatgttcgagtaacgcacatacaatagcttgtaaacttgtattatagagacggagggagagattcaatcccgcctacaccataatactaattata |
117 |
Q |
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| T |
35210506 |
gatatcatgttcgagtagcgcacatacaatagcttgtaaacttatattatagagacggagggagagattcaatcccacctacaccataatactaattata |
35210605 |
T |
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| Q |
118 |
ctaacatgttattcttaaaagtatattatttgaagagatttcgtaattacggttcaactgctttaaaccagtcaaacaacttgaggcaaaattagaatca |
217 |
Q |
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| T |
35210606 |
ctaacatgttattcttaaaagtatattatttgaagagatttcttaattacggttcaactgctttaaaccagtcaaacaactcgaggcaaaattagaatca |
35210705 |
T |
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| Q |
218 |
aatcaccaaactaaccaaaccgtggtataaaggccggttcaaggttcaactgttctatgtcgaaaacactaaatattagacatattattaattacctgag |
317 |
Q |
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| T |
35210706 |
aatcaccaaactaaccaaaccgtggtataaaggccggttcaaggttcaattgttctatgtcgaaaacactaaatattagacatattattaattacctgag |
35210805 |
T |
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| Q |
318 |
gaccttgttctacacctttcttgaatggatcgccaacaacacgtctcaaagcagcggcctttgctt |
383 |
Q |
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| T |
35210806 |
gaccttgttctacacctttcttgaatggatcgccaacaacacgtctcaaagcagcggccttggctt |
35210871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 310 - 369
Target Start/End: Original strand, 43998505 - 43998564
Alignment:
| Q |
310 |
tacctgaggaccttgttctacacctttcttgaatggatcgccaacaacacgtctcaaagc |
369 |
Q |
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| T |
43998505 |
tacctgaggaccttgctctacacccttcttaaatggatcaccaacaacacgtctcaaagc |
43998564 |
T |
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